| addCutter(const cuttertype type, const char *cleaveAtStr, const char *restrictStr) | ms_enzyme |  | 
  | appendProperty(const char *name, const char *value, const char *delimiter, const bool bFirstPlace=false) | ms_customproperty |  | 
  | appendText(const char *line, const bool bFirstPlace=false) | ms_customproperty |  | 
  | canCleave(const int cutterNum, const char leftResidue, const char rightResidue) const | ms_enzyme |  | 
  | clearAllCutters() | ms_enzyme |  | 
  | copyFrom(const ms_enzyme *right) | ms_enzyme |  | 
  | matrix_science::ms_customproperty::copyFrom(const ms_customproperty *src) | ms_customproperty |  | 
  | CTERM_CUTTER enum value | ms_enzyme |  | 
  | cuttertype enum name | ms_enzyme |  | 
  | defaultValues() | ms_enzyme |  | 
  | delNonEmpty() | ms_customproperty |  | 
  | delProp(const char *name) | ms_customproperty |  | 
  | delPropByNumber(const int index) | ms_customproperty |  | 
  | delPropStart(const char *nameBeginning) | ms_customproperty |  | 
  | findProperty(const char *name, const int startFrom=0) const | ms_customproperty |  | 
  | findPropertyBeginning(const char *nameBeginning, const int startFrom=0) const | ms_customproperty |  | 
  | getCleave(const int cutterNum) const | ms_enzyme |  | 
  | getCutterType(const int cutterNum) const | ms_enzyme |  | 
  | getDefaultDelimiter() const | ms_customproperty |  | 
  | getDelimiterByNumber(const int index) const | ms_customproperty |  | 
  | getNumberOfCutters() const | ms_enzyme |  | 
  | getNumberOfProperties() const | ms_customproperty |  | 
  | getPreceedingComments() const | ms_customproperty |  | 
  | getPropertyName(const int index) const | ms_customproperty |  | 
  | getPropValStringByName(const char *name) const | ms_customproperty |  | 
  | getPropValStringByNumber(const int index) const | ms_customproperty |  | 
  | getRestrict(const int cutterNum) const | ms_enzyme |  | 
  | getTitle() const | ms_enzyme |  | 
  | isIndependent() const | ms_enzyme |  | 
  | isSemiSpecific() const | ms_enzyme |  | 
  | isValid() const | ms_enzyme |  | 
  | ms_customproperty() | ms_customproperty |  | 
  | ms_enzyme() | ms_enzyme |  | 
  | ms_enzyme(const ms_enzyme &src) | ms_enzyme |  | 
  | NTERM_CUTTER enum value | ms_enzyme |  | 
  | operator=(const ms_enzyme &right) | ms_enzyme |  | 
  | setDefaultDelimiter(const char *delim) | ms_customproperty |  | 
  | setIndependent(const bool bit) | ms_enzyme |  | 
  | setPreceedingComments(const std::string &comments) | ms_customproperty |  | 
  | setPropertyName(const int index, const char *name) | ms_customproperty |  | 
  | setPropValBoolByName(const char *name, const bool value, const bool bFirstPlace=false) | ms_customproperty |  | 
  | setPropValCharByName(const char *name, const char value, const bool bFirstPlace=false) | ms_customproperty |  | 
  | setPropValFloatByName(const char *name, const double value, const bool bFirstPlace=false) | ms_customproperty |  | 
  | setPropValInt64ByName(const char *name, const INT64 value, const bool bFirstPlace=false) | ms_customproperty |  | 
  | setPropValIntByName(const char *name, const int value, const bool bFirstPlace=false) | ms_customproperty |  | 
  | setPropValStringByName(const char *name, const char *value, const bool bFirstPlace=false) | ms_customproperty |  | 
  | setPropValStringByNumber(const int index, const char *value) | ms_customproperty |  | 
  | setSemiSpecific(const bool value) | ms_enzyme |  | 
  | setTitle(const char *str) | ms_enzyme |  | 
  | uncommentProp(const int index, const char *delimeter=0) | ms_customproperty |  | 
  | UNDEFINED_CUTTER enum value | ms_enzyme |  | 
  | verifyEnzyme(ms_errs *errObj) const | ms_enzyme |  | 
  | ~ms_customproperty() | ms_customproperty |  | 
  | ~ms_enzyme() | ms_enzyme |  |