, including all inherited members.
| clearMatchedIon() | ms_fragment | |
| copyFrom(const ms_fragment *src) | ms_fragment | |
| getAllMatchedIons(std::vector< double > &masses, std::vector< double > &intensities) const | ms_fragment | |
| getCharge() const | ms_fragment | |
| getColumn() const | ms_fragment | |
| getEnd() const | ms_fragment | |
| getLabel(const LABEL_FORMAT fmt=LABEL_FORMAT_TRADITIONAL) const | ms_fragment | |
| getMass() const | ms_fragment | |
| getMatchedIonIntensity() const | ms_fragment | |
| getMatchedIonMass() const | ms_fragment | |
| getNeutralLoss() const | ms_fragment | |
| getPeptideSubstring() const | ms_fragment | |
| getSeriesName() const | ms_fragment | |
| getStart() const | ms_fragment | |
| isCTerminal() const | ms_fragment | |
| isFromAlpha() const | ms_fragment | |
| isFromBeta() const | ms_fragment | |
| isImmonium() const | ms_fragment | |
| isInternal() const | ms_fragment | |
| isNTerminal() const | ms_fragment | |
| isPrecursorNL() const | ms_fragment | |
| isRegular() const | ms_fragment | |
| LABEL_FORMAT enum name | ms_fragment | |
| LABEL_FORMAT_PEPTIDE_VIEW enum value | ms_fragment | |
| LABEL_FORMAT_TRADITIONAL enum value | ms_fragment | |
| ms_fragment() | ms_fragment | |
| ms_fragment(const ms_fragment &src) | ms_fragment | |
| ms_fragment(const int seriesID, const double massValue, const double nlValue, const int col, const int chargeState=1, const double matchedExptMass=0, const double matchedExptIntensity=0) | ms_fragment | |
| ms_fragment(const ms_peptide::PSM psmComponent, const int seriesID, const double massValue, const double nlValue, const int col, const int chargeState, const double matchedExptMass=0, const double matchedExptIntensity=0) | ms_fragment | |
| ms_fragment(const char *seriesName, const double massValue, const double nlValue, const int col, const int chargeState=1, const double matchedExptMass=0, const double matchedExptIntensity=0) | ms_fragment | |
| ms_fragment(const ms_peptide::PSM psmComponent, const char *seriesName, const double massValue, const double nlValue, const int col, const int chargeState, const double matchedExptMass=0, const double matchedExptIntensity=0) | ms_fragment | |
| ms_fragment(const int seriesID, const double massValue, const double nlValue, const char *peptideStr, const int startPos, const int endPos, const int chargeState=1, const double matchedExptMass=0, const double matchedExptIntensity=0) | ms_fragment | |
| ms_fragment(const ms_peptide::PSM psmComponent, const int seriesID, const double massValue, const double nlValue, const char *peptideStr, const int startPos, const int endPos, const int chargeState, const double matchedExptMass=0, const double matchedExptIntensity=0) | ms_fragment | |
| ms_fragment(const char residueName, const double massValue, const double nlValue, const int col=-1, const int chargeState=1, const double matchedExptMass=0, const double matchedExptIntensity=0) | ms_fragment | |
| ms_fragment(const ms_peptide::PSM psmComponent, const char residueName, const double massValue, const double nlValue, const int col, const int chargeState, const double matchedExptMass=0, const double matchedExptIntensity=0) | ms_fragment | |
| ms_fragment(const double massValue, const double nlValue, const int chargeState, const double matchedExptMass=0, const double matchedExptIntensity=0) | ms_fragment | |
| operator=(const ms_fragment &right) | ms_fragment | |
| setMatchedIon(const double mass, const double intensity) | ms_fragment | |
