ms_ms1quant_time_align Member List

This is the complete list of members for ms_ms1quant_time_align, including all inherited members.

appendErrors(const ms_errors &src)	ms_errors
calculateFromConsensuValues(bool replaceExisting=false)	ms_ms1quant_time_align
clearAllErrors()	ms_errors
copyFrom(const ms_errors *right)	ms_errors
featureWidths_t typedef	ms_ms1quant_time_align
fractionToSubProject_t typedef	ms_ms1quant_time_align
getAlgorithmName() const	ms_ms1quant_time_align
getBinSize() const	ms_ms1quant_time_align
getCombinedLimits(const int fractionNum)	ms_ms1quant_time_align
getCombinedLimits(const int fractionNum) const	ms_ms1quant_time_align
getErrorHandler() const	ms_errors
getEstimatedFeatureWidth(const int subProjectId, const double mOverZ, const double rt) const	ms_ms1quant_time_align
getEvaluation(const int subProject, double &meanErrorsRaw, double &meanErrorsAligned, double &stdevErrorsRaw, double &stdevErrorsAligned, double &pearsonCoefficientRaw, double &pearsonCoefficientAligned)	ms_ms1quant_time_align
getFeatureWidths() const	ms_ms1quant_time_align
getFinalResults()	ms_ms1quant_time_align
getFinalResults() const	ms_ms1quant_time_align
getFractionToSubProjectMap() const	ms_ms1quant_time_align
getLastError() const	ms_errors
getLastErrorString() const	ms_errors
getMaxPossibleSharedPeptides(const int fractionNum) const	ms_ms1quant_time_align
getNumSharedPeptides(const int subProject1, const int subProject2) const	ms_ms1quant_time_align
getRToffset(const int myProjectId, const int otherProjectId, const double rtInOtherProject, const double mOverZ) const	ms_ms1quant_time_align
getShiftsFromConsensus() const	ms_ms1quant_time_align
getShiftsToConsensus() const	ms_ms1quant_time_align
getStatus(void) const	ms_ms1quant_time_align
getStatusAsText(void) const	ms_ms1quant_time_align
getSubProjectToFractionMap() const	ms_ms1quant_time_align
getWarningMessages(const warningMessage_t messageType, const int fractionNum) const	ms_ms1quant_time_align
isValid() const	ms_errors
loadXmlFile(const std::string &xmlFilename, const std::string &schemaDirectory)	ms_ms1quant_time_align
ms_errors()	ms_errors
ms_ms1quant_time_align(const int binSize=12)	ms_ms1quant_time_align
ms_ms1quant_time_align(const ms_ms1quant_time_align_body &body)	ms_ms1quant_time_align
saveXmlFile(const std::string &xmlFilename, const std::string &schemaDirectory) const	ms_ms1quant_time_align
setAlgorithmName(const char *algorithmName)	ms_ms1quant_time_align
setAverageFeatureWidths(const std::vector< double > &featureWidths)	ms_ms1quant_time_align
setEvaluation(int subProject, double meanErrorsRaw, double meanErrorsAligned, double stdevErrorsRaw, double stdevErrorsAligned, double pearsonCoefficientRaw, double pearsonCoefficientAligned)	ms_ms1quant_time_align	protected
setMaxPossibleSharedPeptides(const int fractionNum, const int value)	ms_ms1quant_time_align
setNumSharedPeptides(const int subProject1, const int subProject2, int count)	ms_ms1quant_time_align
setWarningMessages(const warningMessage_t messageType, const int fractionNum, const std::string &message)	ms_ms1quant_time_align
ST_TA_CALCULATED enum value	ms_ms1quant_time_align
ST_TA_LOADED_FROM_CDB enum value	ms_ms1quant_time_align
ST_TA_LOADED_FROM_XML enum value	ms_ms1quant_time_align
ST_TA_NO_DATA enum value	ms_ms1quant_time_align
status_t enum name	ms_ms1quant_time_align
TA_WM_LOW_NUM_SHARED_PEPTIDES_BETWEEN_P1_AND_P2 enum value	ms_ms1quant_time_align
TA_WM_NO_SHARED_PEPTIDES_BETWEEN_P1_AND_P2 enum value	ms_ms1quant_time_align
TA_WM_SUBPRJ_HAS_NO_SHARED_PEPTIDES enum value	ms_ms1quant_time_align
TA_WM_USER_SPEC_AUTO_BUT_USING_UNSUPERVISED enum value	ms_ms1quant_time_align
warningMessage_t enum name	ms_ms1quant_time_align
~ms_errors()	ms_errors