Matrix Science header

ms_ms2quantitation Member List

This is the complete list of members for ms_ms2quantitation, including all inherited members.
appendErrors(const ms_errors &src)ms_errors
calculateGeometricMeanRatio(const std::string &accession, int dbIdx, const std::string &ratioName, const std::vector< double > &sample, const std::vector< double > &logSample, const std::vector< ms_peptide_quant_key > &activeKeys, const std::map< ms_peptide_quant_key, int > &inactiveKeys, double normalityPvalue) const ms_quantitation [protected]
calculateMedianRatio(const std::string &accession, int dbIdx, const std::string &ratioName, const std::vector< double > &sample, const std::vector< double > &logSample, const std::vector< ms_peptide_quant_key > &activeKeys, const std::map< ms_peptide_quant_key, int > &inactiveKeys, double normalityPvalue) const ms_quantitation [protected]
calculateWeightedGeometricMeanRatio(const std::string &accession, int dbIdx, const std::string &ratioName, const std::vector< double > &sample, const std::vector< double > &logSample, const std::vector< double > &weights, const std::vector< ms_peptide_quant_key > &activeKeys, const std::map< ms_peptide_quant_key, int > &inactiveKeys, double normalityPvalue) const ms_quantitation [protected]
clearAllErrors()ms_errors
copyFrom(const ms_errors *right)ms_errors
countDistinctPeptides(const std::vector< ms_peptide_quant_key > &activeKeys) const ms_ms2quantitation [protected, virtual]
getCombinedReportRatio(const std::string &ratioName) const ms_ms2quantitation
getCombinedReportRatioNames() const ms_ms2quantitation
getComponentIntensities(const ms_peptide_quant_key &key, bool raw=false) const ms_ms2quantitation
getErrorHandler() const ms_errors
getIntensityNormalisationBase(const std::string &componentName) const ms_ms2quantitation
getLastError() const ms_errors
getLastErrorString() const ms_errors
getMinNumPeptides() const ms_quantitation [protected]
getPeptideQuantKeys(const std::string &accession, int dbIdx) const ms_quantitation
getPeptideRatio(const ms_peptide_quant_key &key, const std::string &ratioName) const ms_ms2quantitation [virtual]
getPeptideRatioNormalisationBase(const std::string &ratioName) const ms_quantitation
getProteinRatio(const std::string &accession, int dbIdx, const std::string &ratioName) const ms_ms2quantitation [virtual]
getProteinRatio(const std::string &accession, int dbIdx, const std::string &ratioName, const ms_peptide_quant_key_vector &includeKeys, const ms_peptide_quant_key_vector &excludeKeys) const ms_ms2quantitation [virtual]
getProteinRatioSample(const std::string &accession, int dbIdx, const std::string &ratioName, const std::vector< ms_peptide_quant_key > &includeKeys, const std::vector< ms_peptide_quant_key > &excludeKeys, std::vector< double > &sample, std::vector< double > &logSample, std::vector< double > &weights, std::vector< ms_peptide_quant_key > &activeKeys, std::map< ms_peptide_quant_key, int > &inactiveKeys, double &normalityPvalue) const ms_quantitation [protected]
getQuantitationMethod() const ms_quantitation
getReportRatioFromFile(unsigned int fileNum, const std::string &ratioName) const ms_ms2quantitation
getReportRatioNamesInFile(unsigned int fileNum) const ms_ms2quantitation
getSortedFinitePeptideRatioValues(const std::string &ratioName, const std::set< ms_peptide_quant_key > &keys, const std::set< ms_peptide_quant_key > &includeKeys, const std::set< ms_peptide_quant_key > &excludeKEys, std::vector< double > &values, std::vector< double > &weights, std::vector< ms_peptide_quant_key > &activeKeys, std::map< ms_peptide_quant_key, int > &inactiveKeys) const ms_ms2quantitation [protected, virtual]
hasIntensityNormalisation() const ms_ms2quantitation
hasPeptideRatio(const ms_peptide_quant_key &key, const std::string &ratioName) const ms_ms2quantitation [virtual]
hasPeptideRatioNormalisation() const ms_ms2quantitation
initialiseBaseSettings(const ms_quant_method &qmBase, const ms_quant_method &qmConfig)ms_quantitation [protected]
isPeptideRatioExcluded(const ms_peptide_quant_key &key, const std::string &ratioName) const ms_ms2quantitation [virtual]
isValid() const ms_errors
ms_errors()ms_errors
ms_ms2quantitation(const ms_peptidesummary &pepsum)ms_ms2quantitation [explicit]
ms_ms2quantitation(const ms_peptidesummary &pepsum, const ms_quant_method &qm)ms_ms2quantitation
normaliseIntensities()ms_ms2quantitation
normalisePeptideRatios()ms_ms2quantitation
proteinKeys_ms_quantitation [protected]
removeCombinedReportRatio(const std::string &ratioName)ms_ms2quantitation
removeIntensityNormalisationBase(const std::string &componentName)ms_ms2quantitation
removeIntensityNormalisationBases()ms_ms2quantitation
removePeptideRatioNormalisationBase(const std::string &ratioName)ms_quantitation
removePeptideRatioNormalisationBases()ms_quantitation
removeReportRatioInFile(unsigned int fileNum, const std::string &ratioName)ms_ms2quantitation
setCombinedReportRatio(const std::string &ratioName, const ms_quant_ratio &ratioDef)ms_ms2quantitation
setIntensityNormalisationBase(const std::string &componentName, double b)ms_ms2quantitation
setMinNumPeptides(int value)ms_quantitation
setPeptideRatioExcluded(const ms_peptide_quant_key &key, const std::string &ratioName)ms_ms2quantitation [virtual]
setPeptideRatioIncluded(const ms_peptide_quant_key &key, const std::string &ratioName)ms_ms2quantitation [virtual]
setPeptideRatioNormalisationBase(const std::string &ratioName, double b)ms_quantitation
setProteinRatioType(const char *value)ms_ms2quantitation [virtual]
setQuantNormalisation(const ms_quant_normalisation *norm)ms_ms2quantitation
setQuantOutliers(const ms_quant_outliers *)ms_ms2quantitation [virtual]
setReportRatioInFile(unsigned int fileNum, const std::string &ratioName, const ms_quant_ratio &ratioDef)ms_ms2quantitation
~ms_errors()ms_errors
~ms_ms2quantitation()ms_ms2quantitation [virtual]
~ms_quantitation()=0ms_quantitation [pure virtual]
Copyright © 2016 Matrix Science Ltd.  All Rights Reserved. Generated on Fri Jun 2 2017 01:44:53