, including all inherited members.
| appendAminoAcid(const ms_umod_aminoacid *aa) | ms_umod_configfile | |
| appendElement(const ms_umod_element *elem) | ms_umod_configfile | |
| appendErrors(const ms_errors &src) | ms_errors | |
| appendModBrick(const ms_umod_modbrick *brick) | ms_umod_configfile | |
| appendModification(const ms_umod_modification *mod) | ms_umod_configfile | |
| applyVisibility(const ms_session *session) | ms_umod_configfile | |
| applyVisibility(const std::vector< int > &groupIds) | ms_umod_configfile | |
| clearAllErrors() | ms_errors | |
| clearAminoAcids() | ms_umod_configfile | |
| clearElements() | ms_umod_configfile | |
| clearModBricks() | ms_umod_configfile | |
| clearModifications() | ms_umod_configfile | |
| copyFrom(const ms_umod_configfile *right) | ms_umod_configfile | |
| matrix_science::ms_errors::copyFrom(const ms_errors *right) | ms_errors | |
| defaultValues() | ms_umod_configfile | [virtual] |
| deleteAminoAcidByName(const char *name) | ms_umod_configfile | |
| deleteAminoAcidByNumber(const int idx) | ms_umod_configfile | |
| deleteElementByName(const char *name) | ms_umod_configfile | |
| deleteElementByNumber(const int idx) | ms_umod_configfile | |
| deleteModBrickByName(const char *name) | ms_umod_configfile | |
| deleteModBrickByNumber(const int idx) | ms_umod_configfile | |
| deleteModificationByName(const char *name) | ms_umod_configfile | |
| deleteModificationByNumber(const int idx) | ms_umod_configfile | |
| findModFileName(const char *modFileName) const | ms_umod_configfile | |
| findModification(const char *modName) const | ms_umod_configfile | |
| getAminoAcidByName(const char *name) const | ms_umod_configfile | |
| getAminoAcidByNumber(const int idx) const | ms_umod_configfile | |
| getConnectionSettings() const | ms_umod_configfile | |
| getDefaultSchemaFileName() | ms_umod_configfile | [static] |
| getElementByName(const char *name) const | ms_umod_configfile | |
| getElementByNumber(const int idx) const | ms_umod_configfile | |
| getErrorHandler() const | ms_errors | |
| getFileName() const | ms_umod_configfile | |
| getLastError() const | ms_errors | |
| getLastErrorString() const | ms_errors | |
| getMajorVersion() const | ms_umod_configfile | |
| getMinorVersion() const | ms_umod_configfile | |
| getModBrickByName(const char *name) const | ms_umod_configfile | |
| getModBrickByNumber(const int idx) const | ms_umod_configfile | |
| getModFileList(const unsigned int flags=MODFILE_FLAGS_ALL) const | ms_umod_configfile | |
| getModificationByName(const char *name) const | ms_umod_configfile | |
| getModificationByNumber(const int idx) const | ms_umod_configfile | |
| getNumberOfAminoAcids() const | ms_umod_configfile | |
| getNumberOfElements() const | ms_umod_configfile | |
| getNumberOfModBricks() const | ms_umod_configfile | |
| getNumberOfModifications() const | ms_umod_configfile | |
| getSchemaFileName() const | ms_umod_configfile | |
| isValid() const | ms_errors | |
| MODFILE_FLAGS enum name | ms_umod_configfile | |
| MODFILE_FLAGS_AASUBST enum value | ms_umod_configfile | |
| MODFILE_FLAGS_ALL enum value | ms_umod_configfile | |
| MODFILE_FLAGS_EMPTY enum value | ms_umod_configfile | |
| MODFILE_FLAGS_HIDDEN enum value | ms_umod_configfile | |
| MODFILE_FLAGS_REGULAR enum value | ms_umod_configfile | |
| ms_errors() | ms_errors | |
| ms_umod_configfile() | ms_umod_configfile | |
| ms_umod_configfile(const char *fileName, const char *schemaFileName, const ms_connection_settings *cs=0, bool useSchema=true) | ms_umod_configfile | |
| ms_umod_configfile(const ms_umod_configfile &right) | ms_umod_configfile | |
| operator=(const ms_umod_configfile &right) | ms_umod_configfile | |
| read_buffer(const char *buffer) | ms_umod_configfile | |
| read_file() | ms_umod_configfile | |
| save_buffer(bool validateAgainstSchema=true) | ms_umod_configfile | |
| save_file() | ms_umod_configfile | |
| setConnectionSettings(const ms_connection_settings &cs) | ms_umod_configfile | |
| setFileName(const char *filename) | ms_umod_configfile | |
| setMajorVersion(const std::string &version) | ms_umod_configfile | |
| setMinorVersion(const std::string &version) | ms_umod_configfile | |
| setSchemaFileName(const char *name) | ms_umod_configfile | |
| updateAminoAcidByName(const char *name, const ms_umod_aminoacid *aa) | ms_umod_configfile | |
| updateAminoAcidByNumber(const int idx, const ms_umod_aminoacid *aa) | ms_umod_configfile | |
| updateElementByName(const char *name, const ms_umod_element *element) | ms_umod_configfile | |
| updateElementByNumber(const int idx, const ms_umod_element *element) | ms_umod_configfile | |
| updateMasses() | ms_umod_configfile | |
| updateModBrickByName(const char *name, const ms_umod_modbrick *brick) | ms_umod_configfile | |
| updateModBrickByNumber(const int idx, const ms_umod_modbrick *brick) | ms_umod_configfile | |
| updateModificationByName(const char *name, const ms_umod_modification *mod) | ms_umod_configfile | |
| updateModificationByNumber(const int idx, const ms_umod_modification *mod) | ms_umod_configfile | |
| validateDocument() const | ms_umod_configfile | |
| ~ms_errors() | ms_errors | |
| ~ms_umod_configfile() | ms_umod_configfile | [virtual] |
