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- g -
geometricMean() :
ms_quant_stats
geometricStandardDeviation() :
ms_quant_stats
get() :
ms_peptide_quant_key_vector
,
ms_spectral_lib_entry
,
ms_linker_site_vector
get_ms_mascotresults_params() :
ms_mascotresfile
,
ms_distiller_data
,
ms_mascotresfile
getA() :
ms_fitexy_result
getAbsoluteValue() :
ms_ms1quant_match_component
getACCESSION() :
ms_searchparams
getAccession() :
ms_protein
,
ms_protein_quant_ratio
,
ms_quant_normalisation_protein
getAccessionByNumber() :
ms_crosslinking_accessions
getAccessionFromNumber() :
ms_spectral_lib_file
getAccessionParseRuleIndex() :
ms_databaseoptions
getAccessionRefParseRuleIndex() :
ms_databaseoptions
getAccessions() :
ms_crosslinking_method
getAccessionSchemaType() :
ms_crosslinking_accessions
,
ms_quant_normalisation_protein
getAccessionsSchemaType() :
ms_crosslinking_method
getAccFromSpeciesLine() :
ms_taxonomyrules
getActiveKeys() :
ms_protein_quant_ratio
getAllChargeStatesSchemaType() :
ms_quant_integration
,
ms_quant_precursor
getAllChargeStatesThreshold() :
ms_quant_integration
getAllChargeStatesThresholdSchemaType() :
ms_quant_integration
getAllCustomParamsForUser() :
ms_security
getAllFamilyMembersWithThisPepMatch() :
ms_mascotresults
,
ms_peptidesummary
,
ms_proteinsummary
getAllGroupIDs() :
ms_security
getAllMatchedIons() :
ms_fragment
getAllMods() :
ms_spectral_lib_file
getAllowElutionShiftSchemaType() :
ms_quant_integration
,
ms_quant_precursor
getAllowMassTimeMatchSchemaType() :
ms_quant_precursor
getAllParamsAsString() :
ms_security_task
getAllProteinsWithThisPepMatch() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getAllUserIDs() :
ms_security
,
ms_group
getAllUSERParams() :
ms_searchparams
getAllValuesFromKey() :
ms_tinycdb
getAlphaVarModsStrLength() :
ms_linker_site_vector
getAltName() :
ms_umod_modification
getAltNameSchemaType() :
ms_umod_modification
getAmbiguityString() :
ms_peptide
getAminoAcidByName() :
ms_umod_configfile
getAminoAcidByNumber() :
ms_umod_configfile
getAnnotation() :
ms_spectral_lib_peak
getAnyMatch() :
ms_peptide
getAnyProteinTermination() :
ms_peptide
getApprovedSchemaType() :
ms_umod_modification
getAutoDetectNumThreads() :
ms_processors
getAvePeptideIdentityThreshold() :
ms_mascotresults
getAverage() :
ms_quant_moverz
,
ms_quant_protocol
getAveragePeptideIntensity() :
ms_ms1quantitation
getAverageResults() :
ms_ms1quantitation
getAverageSchemaType() :
ms_quant_moverz
,
ms_quant_protocol
getAvgeMass() :
ms_umod_aminoacid
,
ms_umod_composition
,
ms_umod_element
,
ms_umod_modbrick
getAvgeMassAsNumber() :
ms_umod_element
getAvgeMassSchemaType() :
ms_umod_aminoacid
,
ms_umod_composition
,
ms_umod_element
,
ms_umod_modbrick
getB() :
ms_fitexy_result
getBetaVarModsStrLength() :
ms_linker_site_vector
getBoolParam() :
ms_session
getBucket() :
ms_ms1quant_charge_state
getBucketWidth() :
ms_ms1quant_charge_state
getCacheDirectory() :
ms_mascotoptions
,
ms_mascotresfile
getCacheFileName() :
ms_distiller_data_search
,
ms_mascotresfile
,
ms_peptidesummary
getCacheFilename() :
ms_distiller_master_search
,
ms_peptidesummary
getCacheStreamName() :
ms_distiller_data_quant
getCarbonMass() :
ms_searchparams
,
ms_masses
getCentroidWidth() :
ms_mascotoptions
getCentroidWidthCount() :
ms_mascotoptions
getCHARGE() :
ms_searchparams
getCharge() :
ms_fragment
,
ms_inputquery
,
ms_peptide
,
ms_peptide_quant_key
,
ms_spectral_lib_entry
getChargeState() :
ms_ms1quant_match
getChargeStateData() :
ms_ms1quant_match
getChargeType() :
ms_ms1quant_match
getCheckNodesAliveFreq() :
ms_clusterparams
getChecksum() :
ms_spectral_lib_peak_list
getChecksumFromNumber() :
ms_spectral_lib_file
getChi2() :
ms_fitexy_result
getChopSource() :
ms_parserule_plus
getChromosome() :
ms_unigene_entry
getClassification() :
ms_umod_specificity
getClassificationSchemaType() :
ms_umod_specificity
getCLE() :
ms_searchparams
getCleave() :
ms_enzyme
getClusterParams() :
ms_datfile
getCode() :
ms_modification
,
ms_umod_neutralloss
getCodeFromXml() :
ms_ms1quant_match
,
ms_ms1quant_match_ratio
,
ms_ms1quant_peptide_status
,
ms_xic
getCodeInfo() :
ms_ms1quant_match_ratio
getCodeSchemaType() :
ms_umod_neutralloss
getCoefficient() :
ms_quant_numerator
getCoefficientSchemaType() :
ms_quant_numerator
getColsToOutput() :
ms_logger
getColumn() :
ms_fragment
getCOM() :
ms_searchparams
getCombinedPeptideSummaryCacheStreamName() :
ms_distiller_master_search
getCombinedReportRatio() :
ms_ms2quantitation
getCombinedReportRatioNames() :
ms_ms2quantitation
getCombineRepeats() :
ms_errs
getCommandStr() :
ms_cronjob
getComment() :
ms_spectral_lib_entry
getCommentField() :
ms_spectral_lib_entry
getComp() :
ms_inputquery
,
ms_quant_method
getComponent() :
ms_protein
,
ms_ms1quant_match
,
ms_ms1quant_match_component
,
ms_ms1quant_peptide_status
getComponentByName() :
ms_quant_method
getComponentByNumber() :
ms_quant_method
getComponentIntensities() :
ms_ms2quantitation
getComponentIntensity() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getComponentProtein() :
ms_peptidesummary
,
ms_mascotresults
getComponentSchemaType() :
ms_quant_method
getComponentStr() :
ms_peptide
getComponentString() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getCompositionString() :
ms_umod_composition
getCompositionStringSchemaType() :
ms_umod_composition
getCompressToolAA() :
ms_mascotoptions
getCompressToolCommandLineFasta() :
ms_mascotoptions
getCompressToolCommandLineLibrary() :
ms_mascotoptions
getCompressToolNA() :
ms_mascotoptions
getCompressToolSL() :
ms_mascotoptions
getCompSchemaType() :
ms_quant_method
getConciseLabelFreeVarMods() :
ms_ms1quant_match
getConnectionSettings() :
ms_crosslinking_configfile
,
ms_datfile
,
ms_enzymefile
,
ms_fragrulesfile
,
ms_masses
,
ms_modfile
,
ms_quant_configfile
,
ms_taxonomyfile
,
ms_umod_configfile
getConnectionTimeout() :
ms_connection_settings
getConsensusData() :
ms_spectral_lib_peak
getConstantName() :
ms_security_task
getConstrainSearchSchemaType() :
ms_quant_method
getContent() :
ms_quant_correction
,
ms_quant_numerator
,
ms_quant_unmodified
getContentSchemaType() :
ms_quant_correction
,
ms_quant_numerator
,
ms_quant_unmodified
getCoreFromLogical() :
ms_processors
getCorrectedMaxSPPwidth() :
ms_ms1quant_charge_state
getCorrectedMinSPPwidth() :
ms_ms1quant_charge_state
getCorrectedSPPwidth() :
ms_ms1quant_charge_state
getCorrection() :
ms_quant_component
getCorrectionMatrix() :
ms_ms1quant_match
getCorrectionSchemaType() :
ms_quant_component
getCount() :
ms_http_client_mime
getCoverage() :
ms_protein
getCR() :
ms_matrix
getCrawlerNumPeaksPer100Da() :
ms_mascotoptions
getCreatePipThreadBlockSize() :
ms_mascotoptions
getCreatePipThreads() :
ms_mascotoptions
getCreateSummaryProgress() :
ms_mascotresults
getCronJob() :
ms_cronoptions
getCronOptions() :
ms_datfile
getCROSSLINKING() :
ms_searchparams
getCrosslinkingMethod() :
ms_mascotresfile
,
ms_peptidesummary
getCtermDelta() :
ms_masses
getCterminalMass() :
ms_masses
getCTerminusMass() :
ms_modification
getCTermMass() :
ms_searchparams
getCtermNeutralLoss() :
ms_masses
getCurrentBytes() :
ms_http_helper_progress
getCutterType() :
ms_enzyme
getCytoBand() :
ms_unigene_entry
getDatabase() :
ms_databases
,
ms_processoroptions
getDatabaseName() :
ms_crosslinking_accession
getDatabaseNameSchemaType() :
ms_crosslinking_accession
getDatabases() :
ms_datfile
getDatabaseType() :
ms_mascotresfile
getDataSourceId() :
ms_ms1quant_match
getDATAURL() :
ms_searchparams
getDate() :
ms_mascotresfile
getDateTimeModified() :
ms_umod_modification
getDateTimeModifiedSchemaType() :
ms_umod_modification
getDateTimePosted() :
ms_umod_modification
getDateTimePostedSchemaType() :
ms_umod_modification
getDatfile() :
ms_distiller_data
getDB() :
ms_searchparams
,
ms_protein
,
ms_protein_quant_ratio
getDBLevelTaxId() :
ms_taxonomyrules
getDBType() :
ms_databaseoptions
getDechargeFragmentPeaks() :
ms_mascotoptions
getDECOY() :
ms_searchparams
getDecoyTypeForDB() :
ms_mascotresfile
getDecoyTypeNoEnzyme() :
ms_mascotoptions
getDecoyTypeSpecific() :
ms_mascotoptions
getDefaultDelimiter() :
ms_customproperty
getDefaultMonitor() :
ms_loggingmonitor
getDefaultNodeHomeDir() :
ms_clusterparams
getDefaultNodeHomeDirFromMaster() :
ms_clusterparams
getDefaultNodeOS() :
ms_clusterparams
getDefaultPasswordExpiryTime() :
ms_security_options
getDefaultPort() :
ms_clusterparams
getDefaultRule() :
ms_taxonomyrules
getDefaultSchemaFileName() :
ms_crosslinking_configfile
,
ms_umod_configfile
getDelimiterByNumber() :
ms_customproperty
getDelta() :
ms_peptide
,
ms_modification
,
ms_quant_localdef
,
ms_spectral_lib_peak
,
ms_umod_modification
getDeltaSchemaType() :
ms_quant_localdef
,
ms_umod_modification
getDenominatorByName() :
ms_quant_ratio
getDenominatorByNumber() :
ms_quant_ratio
getDenominatorSchemaType() :
ms_quant_ratio
getDescription() :
ms_progress_info
,
ms_quant_method
,
ms_security_task
,
ms_umod_neutralloss
,
ms_xml_parameter
,
ms_crosslinking_method
getDescriptionLineSep() :
ms_taxonomyrules
getDescriptionParseRuleIndex() :
ms_databaseoptions
getDescriptionSchemaType() :
ms_crosslinking_method
,
ms_crosslinking_parameter
,
ms_quant_method
,
ms_quant_parameter
,
ms_umod_neutralloss
,
ms_xml_parameter
getDiffsAsText() :
ms_security_tasks
getDiscoveredErrTolModDeltas() :
ms_mascotresults
getDiscoveredErrTolModNames() :
ms_mascotresults
getDiscoveredLocalModDeltas() :
ms_mascotresults
getDiscoveredLocalModNames() :
ms_mascotresults
getDisplayIntensity() :
ms_ms1quant_match
getDisplayNonSignificantMatches() :
ms_mascotoptions
getDistillerProjectStreamName() :
ms_distiller_data
getDistillerResfileTimestamp() :
ms_distiller_data
getDistillerVersion() :
ms_distiller_data
getDistinctPeptide() :
ms_protein
getDistributor() :
ms_license
getDoesNotPairWithByNumber() :
ms_crosslinking_linker
getDoesNotPairWithSchemaType() :
ms_crosslinking_linker
getDoThisRuleFirst() :
ms_taxonomyrules
getDoubleParam() :
ms_session
getDoubleParams() :
ms_security_task
getElectronMass() :
ms_searchparams
,
ms_masses
getElement() :
ms_quant_composition
,
ms_quant_correction
getElementByName() :
ms_umod_configfile
getElementByNumber() :
ms_umod_configfile
getElementSchemaType() :
ms_quant_composition
,
ms_quant_correction
getElemRef() :
ms_umod_aminoacid
,
ms_umod_composition
,
ms_umod_modbrick
getElemRefSchemaType() :
ms_umod_aminoacid
,
ms_umod_composition
,
ms_umod_modbrick
getElutionProfileCorrelationThreshold() :
ms_quant_integration
getElutionProfileCorrelationThresholdSchemaType() :
ms_quant_integration
getElutionTimeDelta() :
ms_quant_integration
getElutionTimeDeltaSchemaType() :
ms_quant_integration
getElutionTimeDeltaUnit() :
ms_quant_integration
getElutionTimeDeltaUnitSchemaType() :
ms_quant_integration
getElutionTimeShift() :
ms_xic
getEmailAddress() :
ms_session
,
ms_user
getEmailFromTextName() :
ms_mascotoptions
getEmailFromUser() :
ms_mascotoptions
getEmailPassword() :
ms_mascotoptions
getEmailProfile() :
ms_mascotoptions
getEmailService() :
ms_mascotoptions
getEmailTimeOutPeriod() :
ms_mascotoptions
getEncryptedPassword() :
ms_user
getEnd() :
ms_fragment
getEndDate() :
ms_license
getEndIndex() :
ms_xic
getEndScanId() :
ms_xic
getEntry() :
ms_wwwoptions
getEntryByName() :
ms_taxonomyfile
getEntryByNumber() :
ms_taxonomyfile
getEntryFromNumber() :
ms_spectral_lib_file
getEntryFromNumberAsText() :
ms_spectral_lib_file
getEnzyme() :
ms_aahelper
,
ms_mascotresfile
getEnzymeByName() :
ms_enzymefile
getEnzymeByNumber() :
ms_enzymefile
getEnzymes() :
ms_mascotfiles
getErrMessageEmailTo() :
ms_mascotoptions
getError() :
ms_distiller_search_status
getErrorCode() :
ms_shapiro_wilk
getErrorHandler() :
ms_errors
getErrorLevel() :
ms_taxonomyrules
getErrorLogFile() :
ms_mascotoptions
getErrorNumber() :
ms_errs
,
ms_mascotresfile
getErrorRepeats() :
ms_errs
getErrorSeverity() :
ms_errs
getErrorString() :
ms_errs
,
ms_mascotresfile
getErrorText() :
ms_http_helper_return
getERRORTOLERANT() :
ms_searchparams
getErrorType() :
ms_http_helper_return
getErrTolMaxAccessions() :
ms_mascotoptions
getErrTolModDelta() :
ms_mascotresults
getErrTolModMasterNeutralLoss() :
ms_mascotresults
getErrTolModMasterString() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getErrTolModName() :
ms_mascotresults
getErrTolModNeutralLoss() :
ms_mascotresults
getErrTolModPepNeutralLoss() :
ms_mascotresults
getErrTolModPepString() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getErrTolModReqPepNeutralLoss() :
ms_mascotresults
getErrTolModReqPepString() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getErrTolModSlaveNeutralLoss() :
ms_mascotresults
getErrTolModSlaveString() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getErrTolModString() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getErrTolParentFilename() :
ms_searchparams
getErrTolPeptide() :
ms_distiller_data_search
getErrTolProbabilityThreshold() :
ms_mascotresults
getExcludedKeys() :
ms_protein_quant_ratio
getExcludeInternalLabelSchemaType() :
ms_quant_multiplex
getExcludeIsobaricFragmentsSchemaType() :
ms_quant_multiplex
getExcludeTaxonomy() :
ms_taxonomychoice
getExclusion() :
ms_quant_method
getExclusionSchemaType() :
ms_quant_method
getExecAfterSearch() :
ms_mascotoptions
getExecTime() :
ms_mascotresfile
getExpectationValue() :
ms_peptide
getExpress() :
ms_unigene_entry
getFastaPath() :
ms_mascotresfile
getFastaVer() :
ms_mascotresfile
getFeatures() :
ms_license
getFeatureTableLength() :
ms_mascotoptions
getFeatureTableMinScore() :
ms_mascotoptions
getFileIndex() :
ms_quant_component
getFileIndexSchemaType() :
ms_quant_component
getFilename() :
ms_http_client_mime
getFILENAME() :
ms_searchparams
getFileName() :
ms_crosslinking_configfile
,
ms_datfile
,
ms_enzymefile
,
ms_fragrulesfile
,
ms_license
,
ms_mascotresfile
,
ms_masses
,
ms_modfile
,
ms_quant_configfile
,
ms_spectral_lib_entry
,
ms_spectral_lib_file
,
ms_taxonomyfile
,
ms_taxspeciesfiles
,
ms_taxnodesfiles
,
ms_umod_configfile
getFileOffset() :
ms_unigene_entry
getFileOffsetFromKey() :
ms_tinycdb
getFileSize() :
ms_fileutilities
getFileTypeToSearch() :
ms_parserule_plus
getFilters() :
ms_crosslinking_method
getFiltersSchemaType() :
ms_crosslinking_method
getFindFileTimeout() :
ms_datfile
getFirstProtAppearedIn() :
ms_peptide
getFirstSerie() :
ms_fragmentationrules
getFirstSeries() :
ms_fragmentationrules
getFirstXicScanId() :
ms_ms1quant_match
getFitexy() :
ms_ms1quant_match_ratio
getFixedMods() :
ms_aahelper
getFixedModsDelta() :
ms_searchparams
getFixedModsName() :
ms_searchparams
getFixedModsNeutralLoss() :
ms_searchparams
getFixedModsResidues() :
ms_searchparams
getFlags() :
ms_mascotresults
,
ms_mascotresults_params
getFlags2() :
ms_mascotresults
,
ms_mascotresults_params
getFlagSchemaType() :
ms_quant_neutralloss
,
ms_umod_neutralloss
getFORMAT() :
ms_searchparams
getFormat() :
ms_spectral_lib_file
,
ms_taxspeciesfiles
,
ms_taxnodesfiles
getFORMVER() :
ms_searchparams
getFormVersion() :
ms_mascotoptions
getFragmentByNumber() :
ms_fragmentvector
getFragResidueMass() :
ms_masses
getFragRulesFile() :
ms_distiller_data
getFrame() :
ms_protein
getFrequencies() :
ms_mascotfiles
getFromUnimod() :
ms_modification
getFullName() :
ms_user
,
ms_umod_aminoacid
,
ms_umod_element
,
ms_umod_modbrick
,
ms_umod_modification
getFullNameSchemaType() :
ms_umod_aminoacid
,
ms_umod_element
,
ms_umod_modbrick
,
ms_umod_modification
getFullUserName() :
ms_session
getGencodeFile() :
ms_taxonomyrules
getGene() :
ms_unigene_entry
getGetSeqBlastAccession() :
ms_mascotoptions
getGetSeqJobIdFile() :
ms_mascotoptions
getGroup() :
ms_security
getGroupFromID() :
ms_security
getGrouping() :
ms_protein
getGroupOfPoster() :
ms_umod_modification
getGroupOfPosterSchemaType() :
ms_umod_modification
getHavePeakList() :
ms_distiller_sub_project
getHeaderComments() :
ms_datfile
getHeaderLine() :
ms_logger
getHeaderValue() :
ms_http_helper
getHiddenSchemaType() :
ms_umod_specificity
getHit() :
ms_peptidesummary
,
ms_mascotresults
,
ms_ms1quant_match
,
ms_ms1quantitation
getHitNumber() :
ms_protein
getHomologyThreshold() :
ms_mascotresults
getHomologyThresholdForHistogram() :
ms_mascotresults
getHostName() :
ms_computeraddress
,
ms_wwwentry
getHT_IDFromLogical() :
ms_processors
getHttpPassword() :
ms_connection_settings
getHttpProtocol() :
ms_connection_settings
getHttpStatusCode() :
ms_http_helper_return
getHttpUsername() :
ms_connection_settings
getHydrogenMass() :
ms_searchparams
,
ms_masses
getHyperThreadedCPUsMask() :
ms_processors
getHyperThreadingState() :
ms_processors
getHypothesisPvalue() :
ms_protein_quant_ratio
getICAT() :
ms_searchparams
getICATFilter() :
ms_mascotoptions
getICATHeavy() :
ms_mascotoptions
getICATLight() :
ms_mascotoptions
getICATQuantitationMethod() :
ms_mascotoptions
getID() :
ms_unigene_entry
,
ms_peptide_quant_key
,
ms_group
,
ms_session
,
ms_security_task
,
ms_user
getId() :
ms_distiller_master_search
,
ms_distiller_search_status
,
ms_distiller_sub_project
getIdentifier() :
ms_taxonomyrules
getIgnore() :
ms_quant_localdef
,
ms_umod_modification
getIgnoredQPs() :
ms_protein
getIgnoreDupeAccession() :
ms_mascotoptions
getIgnoreIonsScoreBelow() :
ms_mascotoptions
,
ms_mascotresults_params
getIgnoreMass() :
ms_modification
getIgnoreSchemaType() :
ms_quant_localdef
,
ms_umod_modification
getIncludeTaxonomy() :
ms_taxonomychoice
getIndex() :
ms_inputquery
getIndexFileName() :
ms_tinycdb
getInetAddress() :
ms_computeraddress
getINSTRUMENT() :
ms_inputquery
,
ms_searchparams
getInstrumentByName() :
ms_fragrulesfile
getInstrumentByNumber() :
ms_fragrulesfile
getInstrumentName() :
ms_fragrulesfile
getIntactLinks() :
ms_peptide
getIntegraAppServerURL() :
ms_security_options
getIntegraDatabaseName() :
ms_security_options
getIntegraOracleServerName() :
ms_security_options
getIntegration() :
ms_quant_method
getIntegrationSchemaType() :
ms_quant_method
getIntegraUsers() :
ms_security
getIntensity() :
ms_spectral_lib_peak
getIntensityNormalisationBase() :
ms_ms2quantitation
getIntensitySigFigs() :
ms_mascotoptions
getInterFileBasePath() :
ms_mascotoptions
getInterFileRelPath() :
ms_mascotoptions
getINTERMEDIATE() :
ms_searchparams
getIntFromKey() :
ms_tinycdb
getIntMax() :
ms_inputquery
getIntMin() :
ms_inputquery
getIntParam() :
ms_session
getIonIntensityThreshold() :
ms_quant_multiplex
getIonIntensityThresholdSchemaType() :
ms_quant_multiplex
getIonMobility() :
ms_inputquery
getIonsDecimalPlaces() :
ms_mascotoptions
getIonSeries() :
ms_quant_multiplex
getIonSeriesSchemaType() :
ms_quant_multiplex
getIonsIntensity() :
ms_peptide
getIonsScore() :
ms_peptide
,
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getIonsScoreCorrected() :
ms_mascotresults
getIonsScoreHistogram() :
ms_mascotresults
getIPAddress() :
ms_session
getIPCLogfile() :
ms_clusterparams
getIPCLogging() :
ms_clusterparams
getIPCTimeout() :
ms_clusterparams
getIsDatabaseActive() :
ms_http_client
getIsFromErrorTolerant() :
ms_peptide
getIsFromLibrary() :
ms_peptide
getIsolatedPrecursorSchemaType() :
ms_quant_quality
getIsolatedPrecursorThreshold() :
ms_quant_quality
getIsolatedPrecursorThresholdSchemaType() :
ms_quant_quality
getIsotope() :
ms_quant_component
getIsotopeSchemaType() :
ms_quant_component
getIsPermitted() :
ms_http_client_session
getIsSecurityEnabled() :
ms_http_client
getIsWebAuthenticationEnabled() :
ms_http_client
getIsXmlUploadedList() :
ms_http_client_session
getIT_MODS() :
ms_inputquery
,
ms_searchparams
getItemFromId() :
ms_obofile
getITOL() :
ms_searchparams
getITOLU() :
ms_searchparams
getJobNumber() :
ms_mascotresfile
getKeepAlive() :
ms_mascotresfile
getKey() :
ms_ms1quant_match
,
ms_peptide_quant_ratio
getLabel() :
ms_fragment
getLabelFree() :
ms_ms1quantitation
getLabelFreeVarMods() :
ms_ms1quant_match
getLastAccessed() :
ms_session
getLastError() :
ms_errs
,
ms_errors
,
ms_mascotresfile
getLastErrorString() :
ms_errs
,
ms_errors
,
ms_mascotresfile
getLastModificationTime() :
ms_fileutilities
getLastQueryAscFile() :
ms_mascotoptions
getLastSerie() :
ms_fragmentationrules
getLastSeries() :
ms_fragmentationrules
getLastXicScanId() :
ms_ms1quant_match
getLessThanMinPepLen() :
ms_peptide
getLIBRARY_SEARCH() :
ms_searchparams
getLibraryEntryId() :
ms_peptidesummary
getLibraryModDelta() :
ms_searchparams
getLibraryModName() :
ms_searchparams
getLibraryModString() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getLibraryName() :
ms_libraryoptions
getLibraryOptions() :
ms_datfile
getLICENSE() :
ms_searchparams
getLicensee() :
ms_license
getLicenseString() :
ms_license
getLicenseVersion() :
ms_license
getLine() :
ms_spectral_lib_entry
getLinkerByNumber() :
ms_crosslinking_linkers
getLinkerMass() :
ms_linker_site
getLinkers() :
ms_crosslinking_method
getLinkerSchemaType() :
ms_crosslinking_linkers
getLinkersSchemaType() :
ms_crosslinking_method
getLinkFrom() :
ms_linker_site
getLinkTo() :
ms_linker_site
getLoaded() :
ms_distiller_data_search
getLoadedSearchIndex() :
ms_distiller_data
getLoadUnassigned() :
ms_distiller_data_search
getLocalDefinition() :
ms_quant_modgroup
getLocalDefinitionSchemaType() :
ms_quant_modgroup
getLocalModifications() :
ms_quant_method
getLocalModsNlStr() :
ms_peptide
getLocalModsStr() :
ms_peptide
getLocalVarModName() :
ms_inputquery
getLocus() :
ms_inputquery
getLocusLink() :
ms_unigene_entry
getLogEventsHandler() :
ms_loggingmonitor
getLogFilename() :
ms_file_logger
getLogFileName() :
ms_cronoptions
,
ms_security_options
getLoggingFileName() :
ms_errs
getLoggingLevel() :
ms_cronoptions
,
ms_errs
,
ms_log
,
ms_security_options
getLogMask() :
ms_loggingmonitor
getLogoImageFile() :
ms_mascotoptions
getLongestPeptideLen() :
ms_protein
getLongestSigPeptideLen() :
ms_protein
getLongParam() :
ms_session
getLongParams() :
ms_security_task
getLoopLinks() :
ms_peptide
getMailTempFile() :
ms_mascotoptions
getMailTransport() :
ms_mascotoptions
getMajorVersion() :
ms_crosslinking_configfile
,
ms_quant_configfile
,
ms_umod_configfile
getMascNodeCtrlFile() :
ms_mascotoptions
getMascotCmdLine() :
ms_mascotoptions
getMascotControlFile() :
ms_mascotoptions
getMascotFileProcessingThreads() :
ms_mascotoptions
getMascotFiles() :
ms_datfile
getMascotJobIdFile() :
ms_mascotoptions
getMascotMessage() :
ms_mascotoptions
getMascotNodeRebootScript() :
ms_clusterparams
getMascotNodeScript() :
ms_clusterparams
getMascotOptions() :
ms_datfile
getMascotSearchURL() :
ms_distiller_data_search
getMascotSecurityOptions() :
ms_security
getMascotServerURL() :
ms_distiller_data_search
getMascotVer() :
ms_mascotresfile
getMass() :
ms_fragment
getMASS() :
ms_searchparams
getMassDecimalPlaces() :
ms_mascotoptions
getMassDelta() :
ms_quant_integration
getMassDeltaSchemaType() :
ms_quant_integration
getMassDeltaUnit() :
ms_quant_integration
getMassDeltaUnitSchemaType() :
ms_quant_integration
getMasses() :
ms_aahelper
,
ms_mascotresfile
,
ms_protein
getMassesWithinTolerance() :
ms_fragmentvector
getMassFile() :
ms_modification
,
ms_modfile
getMassMax() :
ms_inputquery
getMassMin() :
ms_inputquery
getMassType() :
ms_searchparams
getMasterComputer() :
ms_clusterparams
getMasterProjectStreamName() :
ms_distiller_master_project
getMatch() :
ms_ms1quantitation
getMatchedFraction() :
ms_ms1quant_charge_state
getMatchedIonIntensity() :
ms_fragment
getMatchedIonMass() :
ms_fragment
getMatchedRho() :
ms_ms1quant_charge_state
,
ms_quant_integration
getMatchedRhoSchemaType() :
ms_quant_integration
getMatchForHit() :
ms_ms1quantitation
getMaxAlignment() :
ms_ms1quant_charge_state
getMaxConcurrentSearches() :
ms_mascotoptions
getMaxDatabases() :
ms_mascotoptions
getMaxDescriptionLen() :
ms_mascotoptions
getMaxEtagMassDelta() :
ms_mascotoptions
getMaxEtVarMods() :
ms_mascotoptions
getMaxHitsToReport() :
ms_mascotresults_params
getMaxIntactCrosslinkPeptides() :
ms_mascotoptions
getMaxInternalMass() :
ms_fragmentationrules
,
ms_inputquery
,
ms_searchparams
getMaxNumOfReportBuilderColumnArrangements() :
ms_mascotoptions
getMaxNumPeptides() :
ms_mascotoptions
getMaxPepModArrangements() :
ms_mascotoptions
getMaxPepNumModifiedSites() :
ms_mascotoptions
getMaxPepNumVarMods() :
ms_mascotoptions
getMaxPeptideIdentityThreshold() :
ms_mascotresults
getMaxQueries() :
ms_mascotoptions
getMaxRankValue() :
ms_mascotresults
getMaxSearchesPerUser() :
ms_mascotoptions
getMaxSequenceLen() :
ms_mascotoptions
getMaxTaxonomyRules() :
ms_datfile
getMaxVarMods() :
ms_mascotoptions
getMD5Sum() :
ms_fileutilities
getMemberNumber() :
ms_protein
getMessageSource() :
ms_log
getMethod() :
ms_quant_integration
,
ms_quant_normalisation
,
ms_quant_outliers
getMethodByName() :
ms_crosslinking_configfile
,
ms_quant_configfile
getMethodByNumber() :
ms_crosslinking_configfile
,
ms_quant_configfile
getMethodSchemaType() :
ms_quant_integration
,
ms_quant_normalisation
,
ms_quant_outliers
getMinEtagMassDelta() :
ms_mascotoptions
getMinimumA1() :
ms_quant_quality
getMinimumA1SchemaType() :
ms_quant_quality
getMinimumPasswordLength() :
ms_security_options
getMinInternalMass() :
ms_fragmentationrules
,
ms_inputquery
,
ms_searchparams
getMinIonPairs() :
ms_quant_multiplex
getMinIonPairsSchemaType() :
ms_quant_multiplex
getMinNumPeptides() :
ms_quant_method
,
ms_quantitation
getMinNumPeptidesSchemaType() :
ms_quant_method
getMinNumSigUniqueSequences() :
ms_mascotresults_params
getMinorVersion() :
ms_crosslinking_configfile
,
ms_quant_configfile
,
ms_umod_configfile
getMinPepLenInPepSummary() :
ms_distiller_data_search
,
ms_mascotoptions
,
ms_mascotresults
getMinPepLenInPeptideSummary() :
ms_mascotresults_params
getMinPepLenInSearch() :
ms_mascotoptions
getMinPrecursorCharge() :
ms_quant_quality
getMinPrecursorChargeSchemaType() :
ms_quant_quality
getMinProbability() :
ms_mascotresults_params
getMinProbabilityForSLScore() :
ms_peptidesummary
getMiscNotes() :
ms_umod_modification
,
ms_umod_specificity
getMiscNotesSchemaType() :
ms_umod_modification
,
ms_umod_specificity
getMissed() :
ms_aahelper
getMissedCleavages() :
ms_peptide
getModBrickByName() :
ms_umod_configfile
getModBrickByNumber() :
ms_umod_configfile
getMode() :
ms_quant_modgroup
getModeSchemaType() :
ms_quant_modgroup
getModFile() :
ms_quant_modgroup
getModFileList() :
ms_umod_configfile
,
ms_umod_modification
getModFileName() :
ms_crosslinking_does_not_pair_with
,
ms_crosslinking_linker
getModFileNameSchemaType() :
ms_crosslinking_does_not_pair_with
,
ms_crosslinking_linker
getModFileSchemaType() :
ms_quant_modgroup
getModificationByName() :
ms_modvector
,
ms_modfile
,
ms_umod_configfile
getModificationByNumber() :
ms_modvector
,
ms_modfile
,
ms_umod_configfile
getModificationGroupByName() :
ms_quant_component
,
ms_quant_method
getModificationGroupByNumber() :
ms_quant_component
,
ms_quant_method
getModificationGroupSchemaType() :
ms_quant_component
,
ms_quant_method
getModifications() :
ms_mascotfiles
,
ms_quant_satellite
getModificationsSchemaType() :
ms_quant_satellite
getModificationType() :
ms_modification
getModifiedResidue() :
ms_modification
getMODS() :
ms_searchparams
getMods() :
ms_spectral_lib_entry
getModsFromNumber() :
ms_spectral_lib_file
getMonitorEmailCheckFreq() :
ms_mascotoptions
getMonitorLogFile() :
ms_mascotoptions
getMonitorPidFile() :
ms_mascotoptions
getMonitorTestTimeout() :
ms_mascotoptions
getMonoisotopic() :
ms_quant_moverz
getMonoisotopicSchemaType() :
ms_quant_moverz
getMonoLinkByNumber() :
ms_crosslinking_linker
getMonoLinkModification() :
ms_mascotresfile
getMonoLinkSchemaType() :
ms_crosslinking_linker
getMonoLinkStr() :
ms_peptide
getMonoLinkTitle() :
ms_modification
getMonoMass() :
ms_umod_aminoacid
,
ms_umod_composition
,
ms_umod_element
,
ms_umod_modbrick
getMonoMassAsNumber() :
ms_umod_element
getMonoMassSchemaType() :
ms_umod_aminoacid
,
ms_umod_composition
,
ms_umod_element
,
ms_umod_modbrick
getMoverz() :
ms_ms1quant_match_component
,
ms_quant_component
getMoverzSchemaType() :
ms_quant_component
getMrCalc() :
ms_peptide
getMrExperimental() :
ms_peptide
getMSParserVersion() :
ms_mascotresfile
getMudpit() :
ms_mascotoptions
getMudpitSwitch() :
ms_mascotoptions
getMULTI_SITE_MODS() :
ms_searchparams
getMultiFileQueryNumber() :
ms_mascotresfile
getMultiplex() :
ms_quant_protocol
getMultiplexSchemaType() :
ms_quant_protocol
getMultithreadedName() :
ms_processors
getMW() :
ms_spectral_lib_entry
getMz() :
ms_spectral_lib_peak
getName() :
ms_crosslinking_method
,
ms_databaseoptions
,
ms_distiller_sub_project
,
ms_http_client_mime
,
ms_dbprocessors
,
ms_quant_component
,
ms_quant_method
,
ms_quant_modgroup
,
ms_quant_numerator
,
ms_quant_ratio
,
ms_group
,
ms_user
,
ms_spectral_lib_entry
,
ms_wwwentry
,
ms_xml_parameter
getNameOfDB() :
ms_parserule_plus
getNameSchemaType() :
ms_crosslinking_method
,
ms_crosslinking_parameter
,
ms_quant_component
,
ms_quant_method
,
ms_quant_modgroup
,
ms_quant_numerator
,
ms_quant_parameter
,
ms_quant_ratio
,
ms_xml_parameter
getNeutralLoss() :
ms_fragment
,
ms_modification
,
ms_quant_specificity
,
ms_umod_specificity
getNeutralLossRequired() :
ms_modification
getNeutralLossSchemaType() :
ms_quant_specificity
,
ms_umod_specificity
getNew() :
ms_quant_isotope
getNewSchemaType() :
ms_quant_isotope
getNextFamilyProtein() :
ms_mascotresults
getNextPeptide() :
ms_aahelper
getNextSimilarProtein() :
ms_mascotresults
getNextSimilarProteinOf() :
ms_mascotresults
getNextSubsetProtein() :
ms_mascotresults
getNextSubsetProteinOf() :
ms_mascotresults
getNitrogenMass() :
ms_searchparams
,
ms_masses
getNoBreakDescLineIf() :
ms_taxonomyrules
getNodeListFile() :
ms_mascotfiles
getNodeSequenceDatabaseDir() :
ms_clusterparams
getNodesFile() :
ms_taxonomyrules
getNonMudpitScore() :
ms_protein
getNoResultsScript() :
ms_mascotoptions
getNormalisation() :
ms_quant_method
getNormalisationSchemaType() :
ms_quant_method
getNormalityPvalue() :
ms_protein_quant_ratio
getNotes() :
ms_security_task
getNtermDelta() :
ms_masses
getNterminalMass() :
ms_masses
getNTerminusMass() :
ms_modification
getNTermMass() :
ms_searchparams
getNtermNeutralLoss() :
ms_masses
getNTIUserGroup() :
ms_mascotoptions
getNTMonitorGroup() :
ms_mascotoptions
getNum13C() :
ms_peptide
getNumAccessions() :
ms_unigene_entry
getNumAvailableToProcess() :
ms_processors
getNumber() :
ms_quant_element
,
ms_umod_elemref
getNumberOfAccessionDBTypes() :
ms_peptidesummary
getNumberOfAccessions() :
ms_crosslinking_accessions
getNumberOfAltNames() :
ms_umod_modification
getNumberOfAminoAcids() :
ms_umod_configfile
getNumberOfBuckets() :
ms_ms1quant_charge_state
getNumberOfComponents() :
ms_quant_method
getNumberOfCorrections() :
ms_quant_component
getNumberOfCronJobs() :
ms_cronoptions
getNumberOfCutters() :
ms_enzyme
getNumberOfDatabases() :
ms_databases
,
ms_searchparams
,
ms_processoroptions
getNumberOfDenominators() :
ms_quant_ratio
getNumberOfDoesNotPairWiths() :
ms_crosslinking_linker
getNumberOfElements() :
ms_quant_composition
,
ms_umod_configfile
getNumberOfElemRefs() :
ms_umod_aminoacid
,
ms_umod_composition
,
ms_umod_modbrick
getNumberOfEntries() :
ms_obofile
,
ms_taxonomyfile
,
ms_wwwoptions
getNumberOfEnzymes() :
ms_enzymefile
getNumberOfErrors() :
ms_mascotresfile
,
ms_errs
getNumberOfExcludeTaxonomies() :
ms_taxonomychoice
getNumberOfExclusions() :
ms_quant_method
getNumberOfFamilyAccessionDBTypes() :
ms_peptidesummary
getNumberOfFamilyMembers() :
ms_mascotresults
getNumberOfFragments() :
ms_fragmentvector
getNumberOfGencodeFiles() :
ms_taxonomyrules
getNumberOfHits() :
ms_mascotresults
getNumberOfIgnoreDupeAccessions() :
ms_mascotoptions
getNumberOfIgnoreMasses() :
ms_modification
getNumberOfIgnores() :
ms_quant_localdef
,
ms_umod_modification
getNumberOfIncludeTaxonomies() :
ms_taxonomychoice
getNumberOfInstruments() :
ms_fragrulesfile
getNumberOfIonSeries() :
ms_quant_multiplex
getNumberOfIsotopes() :
ms_quant_component
getNumberOfLibraries() :
ms_libraryoptions
getNumberOfLibraryMods() :
ms_searchparams
getNumberOfLinkedPeptides() :
ms_peptide
getNumberOfLinkers() :
ms_crosslinking_linkers
getNumberOfLocalDefinitions() :
ms_quant_modgroup
getNumberOfLocalVarMods() :
ms_inputquery
getNumberOfMethods() :
ms_crosslinking_configfile
,
ms_quant_configfile
getNumberOfModBricks() :
ms_umod_configfile
getNumberOfModFiles() :
ms_quant_modgroup
getNumberOfModificationGroups() :
ms_quant_component
,
ms_quant_method
getNumberOfModifications() :
ms_modvector
,
ms_modfile
,
ms_umod_configfile
getNumberOfModifiedResidues() :
ms_modification
getNumberOfMonoLinks() :
ms_crosslinking_linker
getNumberOfNeutralLosses() :
ms_quant_specificity
,
ms_umod_specificity
getNumberOfNoBreakDescLineIf() :
ms_taxonomyrules
getNumberOfNodesFiles() :
ms_taxonomyrules
getNumberOfNumerators() :
ms_quant_ratio
getNumberOfParameters() :
ms_xml_parameters
,
ms_crosslinking_parameters
,
ms_quant_parameters
getNumberOfParseRules() :
ms_parseoptions
getNumberOfPeaks() :
ms_inputquery
getNumberOfPepNeutralLosses() :
ms_umod_specificity
,
ms_quant_specificity
getNumberOfPeptides() :
ms_quant_normalisation_peptides
getNumberOfPerDbSrcRules() :
ms_taxonomyrules
getNumberOfPrefixRemoves() :
ms_taxonomyrules
getNumberOfProcessors() :
ms_processoroptions
getNumberOfProperties() :
ms_customproperty
getNumberOfProteins() :
ms_quant_normalisation_proteins
getNumberOfReportNumberChoices() :
ms_mascotoptions
getNumberOfReportRatios() :
ms_quant_method
getNumberOfResfiles() :
ms_mascotresfile
getNumberOfSeqs() :
ms_quant_method
getNumberOfSpeciesFiles() :
ms_taxonomyrules
getNumberOfSpecificities() :
ms_quant_localdef
,
ms_umod_modification
getNumberOfStrFiles() :
ms_taxonomyrules
getNumberOfSubClusters() :
ms_clusterparams
getNumberOfSubtasks() :
ms_progress_info
getNumberOfSuffixRemoves() :
ms_taxonomyrules
getNumberOfTargetFDRPercentages() :
ms_mascotoptions
getNumberOfTasks() :
ms_security_tasks
getNumberOfThreads() :
ms_databaseoptions
,
ms_dbprocessors
getNumberOfUnassigned() :
ms_mascotresults
getNumberOfUnmodified() :
ms_quant_modgroup
getNumberOfXrefs() :
ms_umod_modification
getNumberSchemaType() :
ms_quant_element
,
ms_umod_elemref
getNumComponents() :
ms_ms1quant_match
,
ms_protein
getNumCores() :
ms_processors
getNumDecoyHitsAboveHomology() :
ms_mascotresults
getNumDecoyHitsAboveIdentity() :
ms_mascotresults
getNumDiscoveredErrTolMods() :
ms_mascotresults
getNumDiscoveredFixedMods() :
ms_mascotresults
getNumDiscoveredIntactLinks() :
ms_mascotresults
getNumDiscoveredLibraryMods() :
ms_mascotresults
getNumDiscoveredLocalMods() :
ms_mascotresults
getNumDiscoveredNonSpecCleavage() :
ms_mascotresults
getNumDiscoveredVariableMods() :
ms_mascotresults
getNumDisplayPeptides() :
ms_protein
getNumDistinctPeptideRepeats() :
ms_protein
getNumDistinctPeptides() :
ms_protein
getNumEntries() :
ms_spectral_lib_file
getNumeratorByName() :
ms_quant_ratio
getNumeratorByNumber() :
ms_quant_ratio
getNumeratorSchemaType() :
ms_quant_ratio
getNumEtSeqsSearched() :
ms_mascotresfile
getNumGroups() :
ms_ms1quantitation
getNumHits() :
ms_mascotresfile
,
ms_ms1quant_match
,
ms_ms1quantitation
getNumHitsAboveHomology() :
ms_mascotresults
getNumHitsAboveIdentity() :
ms_mascotresults
getNumIonsMatched() :
ms_peptide
getNumLibraryEntries() :
ms_mascotresfile
getNumLogEventsHandlers() :
ms_loggingmonitor
getNumLogicalPerPhysical() :
ms_processors
getNumMatches() :
ms_ms1quantitation
getNumMatchesForGroup() :
ms_ms1quantitation
getNumMatchesForHit() :
ms_ms1quantitation
getNumObservedForEmPAI() :
ms_protein
getNumOnSystem() :
ms_processors
getNumPeaks() :
ms_spectral_lib_peak_list
,
ms_spectral_lib_entry
getNumPeptideRatios() :
ms_ms1quant_match
getNumPeptides() :
ms_quant_average
,
ms_protein
,
ms_ms1quant_match_component
getNumPeptidesSchemaType() :
ms_quant_average
getNumPeptideStatuses() :
ms_ms1quantitation
getNumPhysicalOnSystem() :
ms_processors
getNumPmfQueriesUsed() :
ms_proteinsummary
getNumPoints() :
ms_xic
getNumProcessorGroups() :
ms_processors
getNumProcessorsLicensed() :
ms_license
getNumProteinFamilies() :
ms_ms1quantitation
getNumProteins() :
ms_peptide
getNumQueries() :
ms_mascotresfile
getNumRanges() :
ms_ms1quant_match_component
getNumResidues() :
ms_spectral_lib_file
,
ms_mascotresfile
getNumSearches() :
ms_distiller_master_project
,
ms_distiller_search_status_list
getNumSeqs() :
ms_mascotresfile
getNumSeqsAfterTax() :
ms_mascotresfile
getNumSubprojects() :
ms_distiller_master_project
getNumSubsearches() :
ms_distiller_master_search
getNumUsed() :
ms_inputquery
getNumVals() :
ms_inputquery
getObserved() :
ms_peptide
getObservedCharge() :
ms_mascotresfile
getObservedIntensity() :
ms_mascotresfile
getObservedMass() :
ms_mascotresfile
getObservedMrValue() :
ms_mascotresfile
getOld() :
ms_quant_isotope
getOldSchemaType() :
ms_quant_isotope
getOpaqueString() :
ms_peptide_quant_key
getOpaqueStringAndID() :
ms_peptide_quant_key
getOsName() :
ms_http_client
getOutlierKeys() :
ms_protein_quant_ratio
getOutliers() :
ms_quant_method
getOutliersSchemaType() :
ms_quant_method
getOVERVIEW() :
ms_searchparams
getOxygenMass() :
ms_searchparams
,
ms_masses
getPairsWith() :
ms_modification
,
ms_umod_neutralloss
getPairsWithSchemaType() :
ms_umod_neutralloss
getParameterByName() :
ms_crosslinking_parameters
,
ms_quant_parameters
getParameterByNumber() :
ms_crosslinking_parameters
,
ms_quant_parameters
getParameterSchemaType() :
ms_crosslinking_filters
,
ms_crosslinking_parameters
,
ms_crosslinking_scope
,
ms_quant_parameters
,
ms_xml_parameters
,
ms_crosslinking_settings
getParams() :
ms_session
getParent() :
ms_taxonomytree
getParseOptions() :
ms_datfile
getParseRule() :
ms_parseoptions
,
ms_wwwentry
getPasswordExpiry() :
ms_user
getPath() :
ms_databaseoptions
,
ms_wwwentry
getPeak() :
ms_spectral_lib_peak_list
getPeakAnnotationLevel() :
ms_spectral_lib_peak_list
getPeakEndIndex() :
ms_xic
getPeakEndScanId() :
ms_xic
getPeakIntensity() :
ms_inputquery
getPeakList() :
ms_spectral_lib_entry
,
ms_inputquery
getPeakListChecksum() :
ms_spectral_lib_entry
getPeakListObject() :
ms_spectral_lib_entry
getPeakMass() :
ms_inputquery
getPeakStartIndex() :
ms_xic
getPeakStartScanId() :
ms_xic
getPeakState() :
ms_xic
getPeaksUsedFromIons1() :
ms_peptide
getPeaksUsedFromIons2() :
ms_peptide
getPeaksUsedFromIons3() :
ms_peptide
getPEP_ISOTOPE_ERROR() :
ms_searchparams
getPepEnd() :
ms_aahelper
getPepIdentThreshProtected() :
ms_mascotresults
getPepNeutralLoss() :
ms_modification
,
ms_quant_specificity
,
ms_umod_specificity
getPepNeutralLossSchemaType() :
ms_quant_specificity
,
ms_umod_specificity
getPepNumber() :
ms_protein
getPepSearchTool() :
ms_mascotoptions
getPepSearchToolCommandLine() :
ms_mascotoptions
getPepStart() :
ms_aahelper
getPepsWithSameScore() :
ms_peptidesummary
,
ms_mascotresults
,
ms_proteinsummary
getPepThresholdType() :
ms_quant_quality
getPepThresholdTypeSchemaType() :
ms_quant_quality
getPepThresholdValue() :
ms_quant_quality
getPepThresholdValueSchemaType() :
ms_quant_quality
getPeptide() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
,
ms_quant_normalisation_peptides
,
ms_proteinsummary
getPeptideAmbiguityRanks() :
ms_peptidesummary
getPeptideComponentID() :
ms_protein
getPeptideDuplicate() :
ms_protein
getPeptideEnd() :
ms_protein
getPeptideExpectationValue() :
ms_mascotresults
getPeptideFrame() :
ms_protein
getPeptideIdentityThreshold() :
ms_mascotresults
getPeptideIonsScore() :
ms_protein
getPeptideIsBold() :
ms_protein
getPeptideKey() :
ms_ms1quant_match_component
getPeptideLength() :
ms_peptide
getPeptideMultiplicity() :
ms_protein
getPeptideP() :
ms_protein
getPeptideQuantKeys() :
ms_quantitation
getPeptideQuery() :
ms_protein
getPeptideRatio() :
ms_customquantitation
,
ms_ms1quant_match
,
ms_ms2quantitation
,
ms_quantitation
getPeptideRatioNormalisationBase() :
ms_quantitation
getPeptideResidueAfter() :
ms_protein
getPeptideResidueBefore() :
ms_protein
getPeptides() :
ms_quant_normalisation
getPeptideSchemaType() :
ms_quant_normalisation_peptides
getPeptideShowCheckbox() :
ms_protein
getPeptidesSchemaType() :
ms_quant_normalisation
getPeptideStart() :
ms_protein
getPeptideStatus() :
ms_ms1quantitation
getPeptideStr() :
ms_peptide
getPeptideString() :
ms_ms1quant_match
getPeptideSubstring() :
ms_fragment
getPeptideSummaryCacheStreamName() :
ms_distiller_search_status
getPeptideSummaryFlags() :
ms_distiller_data_search
getPeptideSummaryFlags2() :
ms_distiller_data_search
getPeptideThreshold() :
ms_mascotresults
getPepTol() :
ms_inputquery
getPepTolString() :
ms_inputquery
getPepTolUnits() :
ms_inputquery
getPercolator() :
ms_distiller_data_search
getPercolatorExeFlags() :
ms_mascotoptions
getPercolatorFeatures() :
ms_mascotoptions
getPercolatorFileNames() :
ms_mascotresfile
getPercolatorMinQueries() :
ms_mascotoptions
getPercolatorMinSequences() :
ms_mascotoptions
getPercolatorScores() :
ms_peptide
getPercolatorTargetRankRelativeThreshold() :
ms_mascotoptions
getPercolatorTargetRankScoreThreshold() :
ms_mascotoptions
getPercolatorUseProteins() :
ms_distiller_data_search
getPercolatorUseRT() :
ms_distiller_data_search
getPerDbSrcRule() :
ms_taxonomyrules
getPerfectObservedMatrix() :
ms_ms1quant_match
getPermittedTasks() :
ms_group
,
ms_session
getPermittedTasksForUser() :
ms_security
getPFA() :
ms_searchparams
getPhysicalFromLogical() :
ms_processors
getPoint() :
ms_xic
getPort() :
ms_computeraddress
getPortNumber() :
ms_wwwentry
getPosition() :
ms_quant_specificity
,
ms_quant_unmodified
,
ms_umod_specificity
getPositionSchemaType() :
ms_quant_specificity
,
ms_quant_unmodified
,
ms_umod_specificity
getPreceedingComments() :
ms_customproperty
,
ms_databaseoptions
getPRECURSOR() :
ms_searchparams
getPrecursor() :
ms_quant_protocol
getPrecursorChargeFromNumber() :
ms_spectral_lib_file
getPrecursorCutOutLowerLimit() :
ms_mascotoptions
getPrecursorCutOutUpperLimit() :
ms_mascotoptions
getPrecursorMZ() :
ms_spectral_lib_entry
getPrecursorMZFromNumber() :
ms_spectral_lib_file
getPrecursorRange() :
ms_quant_integration
getPrecursorRangeSchemaType() :
ms_quant_integration
getPrecursorSchemaType() :
ms_quant_protocol
getPredictionMatrix() :
ms_ms1quant_match
getPrefixRemove() :
ms_taxonomyrules
getPrettyRank() :
ms_peptide
getPrimaryNlStr() :
ms_peptide
getProbabilityThreshold() :
ms_mascotresults
getProbFromScore() :
ms_mascotresults
getProbOfPepBeingRandomMatch() :
ms_mascotresults
getProbOfProteinBeingRandomMatch() :
ms_mascotresults
getProcessingOptions() :
ms_quant_integration
getProcessingOptionsSchemaType() :
ms_quant_integration
getProcessor() :
ms_processoroptions
getProcessorName() :
ms_processors
getProcessors() :
ms_datfile
getProgress() :
ms_progress_info
getProgressInfo() :
ms_mascotresfile
,
ms_quantitation
getProjectRelativePath() :
ms_distiller_sub_project
getPropertyName() :
ms_customproperty
getProportion() :
ms_http_helper_progress
getPropValStringByName() :
ms_customproperty
getPropValStringByNumber() :
ms_customproperty
getProtein() :
ms_mascotresults
,
ms_peptide
,
ms_peptidesummary
,
ms_quant_normalisation_proteins
getProteinDescription() :
ms_mascotresults
getProteinEmPAI() :
ms_peptidesummary
,
ms_mascotresults
getProteinExpectationValue() :
ms_mascotresults
getProteinFamilySwitch() :
ms_mascotoptions
getProteinGrouping() :
ms_distiller_data_search
getProteinMass() :
ms_mascotresults
getProteinRatio() :
ms_ms2quantitation
,
ms_quantitation
,
ms_customquantitation
,
ms_ms1quantitation
,
ms_quantitation
,
ms_ms2quantitation
,
ms_ms1quantitation
getProteinRatioSample() :
ms_quantitation
getProteinRatioType() :
ms_quant_method
getProteinRatioTypeSchemaType() :
ms_quant_method
getProteins() :
ms_quant_normalisation
,
ms_peptide
getProteinSchemaType() :
ms_quant_normalisation_proteins
getProteinScoreCutoff() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getProteinScoreForHistogram() :
ms_mascotresults
getProteinsInResultsFile() :
ms_mascotoptions
getProteinsSchemaType() :
ms_quant_normalisation
getProteinSummaryHit() :
ms_protein
getProteinsWithThisPepMatch() :
ms_mascotresults
,
ms_peptidesummary
,
ms_proteinsummary
getProteinTaxonomyIDs() :
ms_mascotresults
getProteinThreshold() :
ms_mascotresults
getProtocol() :
ms_quant_method
getProtocolSchemaType() :
ms_quant_method
getProtScoreType() :
ms_quant_method
getProtScoreTypeSchemaType() :
ms_quant_method
getProxyConfig() :
ms_http_helper
getProxyPassword() :
ms_mascotoptions
,
ms_connection_settings
getProxyServer() :
ms_connection_settings
,
ms_mascotoptions
getProxyServerType() :
ms_connection_settings
getProxyType() :
ms_mascotoptions
getProxyUserAndPassword() :
ms_connection_settings
getProxyUsername() :
ms_mascotoptions
,
ms_connection_settings
getPValue() :
ms_shapiro_wilk
getQ() :
ms_fitexy_result
getQmatch() :
ms_mascotresults
,
ms_spectral_lib_file
,
ms_mascotresults
getQuality() :
ms_ms1quant_match_ratio
,
ms_quant_method
getQualitySchemaType() :
ms_quant_method
getQuant() :
ms_distiller_data
getQuantCount() :
ms_distiller_data
getQuantForSearch() :
ms_distiller_data
getQuantitation() :
ms_mascotresfile
getQUANTITATION() :
ms_searchparams
getQuantitationComponentForPeptide() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getQuantitationDatasources() :
ms_ms1quantitation
getQuantitationMethod() :
ms_mascotresfile
,
ms_quantitation
getQuantMethod() :
ms_peptidesummary
,
ms_distiller_data
getQuantMethodXml() :
ms_distiller_data_search
getQUE() :
ms_searchparams
getQuery() :
ms_peptide
,
ms_ms1quant_peptide_status
getQueryAndRank() :
ms_peptide_quant_key
getQueryList() :
ms_peptidesummary
getQuerySectionValue() :
ms_mascotresfile
getQuerySectionValueDouble() :
ms_mascotresfile
getQuerySectionValueInt() :
ms_mascotresfile
getQuerySectionValueStr() :
ms_mascotresfile
getQuickRefSearch() :
ms_taxonomyrules
getRange() :
ms_ms1quant_match_component
getRank() :
ms_ms1quant_peptide_status
,
ms_peptide
getRatioName() :
ms_protein_quant_ratio
,
ms_peptide_quant_ratio
,
ms_ms1quant_match_ratio
getRawAbsolutePath() :
ms_distiller_sub_project
getRawfile() :
ms_inputquery
getRawFormat() :
ms_distiller_sub_project
getRawRelativePath() :
ms_distiller_sub_project
getRawSampleNumber() :
ms_distiller_sub_project
getRawScans() :
ms_inputquery
getRC() :
ms_matrix
getReadableLabelFreeVarMods() :
ms_ms1quant_match
getReadableVarMods() :
ms_ms1quantitation
,
ms_mascotresults
getReadableVarModsConcise() :
ms_ms1quantitation
getRecordID() :
ms_umod_modification
getRecordIDSchemaType() :
ms_umod_modification
getRedirectPolicy() :
ms_connection_settings
getReferenceAccession() :
ms_quant_average
getReferenceAccessionSchemaType() :
ms_quant_average
getReferenceAmount() :
ms_quant_average
getReferenceAmountSchemaType() :
ms_quant_average
getReferenceDatabase() :
ms_quant_average
getReferenceDatabaseNumberOfSL() :
ms_mascotresfile
getReferenceDatabaseSchemaType() :
ms_quant_average
getReferenceFasta() :
ms_libraryoptions
getReferenceFastaTaxonomyTitle() :
ms_libraryoptions
getReferenceHitId() :
ms_ms1quant_average_results
getReferenceMemberNumber() :
ms_ms1quant_average_results
getRegionEndIndex() :
ms_xic
getRegionEndScanId() :
ms_xic
getRegionStartIndex() :
ms_xic
getRegionStartScanId() :
ms_xic
getRelativeMass() :
ms_ms1quant_match_component
getRepeatSearchString() :
ms_mascotresfile
getRepEntryByName() :
ms_wwwoptions
getReplicate() :
ms_quant_protocol
getReplicateSchemaType() :
ms_quant_protocol
getREPORT() :
ms_searchparams
getReportBuilderColumnArrangement() :
ms_mascotoptions
getReportDetailSchemaType() :
ms_quant_method
getReporter() :
ms_quant_protocol
getReporterSchemaType() :
ms_quant_protocol
getReporterTol() :
ms_quant_reporter
getReporterTolSchemaType() :
ms_quant_reporter
getReporterTolUnit() :
ms_quant_reporter
getReporterTolUnitSchemaType() :
ms_quant_reporter
getReportNumberChoice() :
ms_mascotoptions
getReportRatioByName() :
ms_quant_method
getReportRatioByNumber() :
ms_quant_method
getReportRatioFromFile() :
ms_ms2quantitation
getReportRatioNamesInFile() :
ms_ms2quantitation
getReportRatioSchemaType() :
ms_quant_method
getReporttop() :
ms_distiller_data_search
getREPTYPE() :
ms_searchparams
getReqPepNeutralLoss() :
ms_modification
getRequestData() :
ms_http_helper_handles
getRequireBoldRed() :
ms_distiller_data_search
getRequireBoldRedSchemaType() :
ms_quant_method
getRequiredSchemaFileNames() :
ms_distiller_data
getRequiredSchemaType() :
ms_quant_pepneutralloss
,
ms_quant_modgroup
getResfile() :
ms_mascotresults
,
ms_mascotresfile
getResfileCache() :
ms_mascotoptions
getResfileStreamName() :
ms_distiller_search_status
getResidueMass() :
ms_masses
,
ms_modification
,
ms_searchparams
getRestrict() :
ms_enzyme
getResult() :
ms_shapiro_wilk
getResultsCache() :
ms_mascotoptions
getResultsFile() :
ms_distiller_subsearch
,
ms_distiller_search_status
getResultsFileFormatVersion() :
ms_mascotoptions
getResultsFileName() :
ms_http_client_search
getResultsFullURL() :
ms_mascotoptions
getResultsFullURL_2() :
ms_mascotoptions
getResultsListStreamName() :
ms_distiller_sub_project
getResultsParameters() :
ms_mascotresults
getResultsPerlScript() :
ms_mascotoptions
getResultsPerlScript_2() :
ms_mascotoptions
getResultsStreamName() :
ms_distiller_data_quant
getRetentionTimes() :
ms_inputquery
getReviewColDisplay() :
ms_mascotoptions
getReviewColWidth() :
ms_mascotoptions
getRMSDeltas() :
ms_protein
getRt() :
ms_ms1quant_match_range
getRtPeakEnd() :
ms_xic
getRtPeakStart() :
ms_xic
getRtRegionEnd() :
ms_xic
getRtRegionStart() :
ms_xic
getRule() :
ms_parserule_plus
getRULES() :
ms_searchparams
,
ms_inputquery
getRuleStr() :
ms_parserule
getSampleSize() :
ms_protein_quant_ratio
getSARExtendedErrorCode() :
ms_fileutilities
getSatellite() :
ms_quant_component
getSatelliteSchemaType() :
ms_quant_component
getScan() :
ms_ms1quant_match_range
getScanNumbers() :
ms_inputquery
getSchemaDirectory() :
ms_quant_configfile
getSchemaFileName() :
ms_crosslinking_configfile
,
ms_umod_configfile
,
ms_quant_configfile
getSchemaType() :
ms_quant_component
,
ms_quant_protocol
,
ms_quant_parameter
,
ms_umod_element
,
ms_quant_element
,
ms_crosslinking_accessions
,
ms_crosslinking_filters
,
ms_quant_satellite
,
ms_crosslinking_monolink
,
ms_umod_aminoacid
,
ms_crosslinking_settings
,
ms_quant_composition
,
ms_quant_specificity
,
ms_quant_localdef
,
ms_quant_quality
,
ms_quant_multiplex
,
ms_quant_normalisation
,
ms_quant_normalisation_peptides
,
ms_quant_outliers
,
ms_quant_ratio
,
ms_quant_precursor
,
ms_quant_parameters
,
ms_quant_replicate
,
ms_quant_unmodified
,
ms_umod_elemref
,
ms_quant_pepneutralloss
,
ms_quant_normalisation_proteins
,
ms_quant_neutralloss
,
ms_quant_numerator
,
ms_quant_normalisation_protein
,
ms_quant_normalisation_peptide
,
ms_quant_modgroup
,
ms_quant_correction
,
ms_quant_moverz
,
ms_quant_integration
,
ms_quant_method
,
ms_quant_isotope
,
ms_crosslinking_parameter
,
ms_crosslinking_parameters
,
ms_quant_average
,
ms_crosslinking_scope
,
ms_crosslinking_linkers
,
ms_crosslinking_accession
,
ms_crosslinking_method
,
ms_crosslinking_linker
,
ms_crosslinking_does_not_pair_with
,
ms_quant_reporter
,
ms_umod_composition
,
ms_umod_neutralloss
,
ms_umod_specificity
,
ms_umod_modification
,
ms_umod_xref
,
ms_xml_parameters
,
ms_umod_modbrick
,
ms_xml_parameter
getScope() :
ms_crosslinking_method
getScopeSchemaType() :
ms_crosslinking_method
getScore() :
ms_protein
getScoreExpectCutOff() :
ms_distiller_data_search
getScoreWithET() :
ms_protein
getScoring() :
ms_distiller_data_search
getSearch() :
ms_distiller_master_project
,
ms_distiller_data
getSEARCH() :
ms_searchparams
getSearch() :
ms_distiller_search_status_list
getSearchCount() :
ms_distiller_data
getSearchLogFile() :
ms_mascotoptions
getSearchStatusListStreamName() :
ms_distiller_search_status_list
getSearchSubmitMode() :
ms_mascotoptions
getSearchTaskID() :
ms_http_client_search
getSecsToWaitForNodeAtStartup() :
ms_clusterparams
getSectionName() :
ms_mascotresfile
getSectionValue() :
ms_mascotresfile
getSectionValueDouble() :
ms_mascotresfile
getSectionValueInt() :
ms_mascotresfile
getSectionValueStr() :
ms_mascotresfile
getSEG() :
ms_searchparams
getSelection() :
ms_quant_average
getSelectionSchemaType() :
ms_quant_average
getSelectSwitch() :
ms_mascotoptions
getSendmailPath() :
ms_mascotoptions
getSeparateLockMem() :
ms_mascotoptions
getSeq() :
ms_inputquery
,
ms_quant_method
getSeqEntryByName() :
ms_wwwoptions
getSeqSchemaType() :
ms_quant_method
getSequence() :
ms_quant_normalisation_peptide
,
ms_spectral_lib_entry
getSequenceFile() :
ms_http_client_session
getSequenceFromNumber() :
ms_spectral_lib_file
getSequenceMass() :
ms_mascotresults
getSequenceSchemaType() :
ms_quant_normalisation_peptide
getSeriesDescription() :
ms_fragmentationrules
getSeriesName() :
ms_fragmentationrules
,
ms_fragment
getSeriesUsedStr() :
ms_peptide
getServer() :
ms_distiller_search_status
getSessionID() :
ms_connection_settings
,
ms_http_client_search
,
ms_http_client_session
getSessionTimeout() :
ms_security_options
getSettings() :
ms_crosslinking_method
getSettingsSchemaType() :
ms_crosslinking_method
getShift() :
ms_quant_correction
getShiftSchemaType() :
ms_quant_correction
getShowSamesets() :
ms_distiller_data_search
getShowSamesetsFamily() :
ms_distiller_data_search
getShowSubset() :
ms_distiller_data_search
getShowSubsetFamily() :
ms_distiller_data_search
getShowSubSets() :
ms_quant_method
getShowSubsets() :
ms_mascotoptions
getShowSubSetsSchemaType() :
ms_quant_method
getSigmaA() :
ms_fitexy_result
getSigmaB() :
ms_fitexy_result
getSigmaX() :
ms_fitexy_result
getSigmaY() :
ms_fitexy_result
getSignificanceThreshold() :
ms_distiller_data_search
getSigThreshold() :
ms_mascotoptions
getSigThresholdValue() :
ms_quant_method
getSigThresholdValueSchemaType() :
ms_quant_method
getSimilarProteinDB() :
ms_protein
getSimilarProteinName() :
ms_protein
getSimilarProteins() :
ms_protein
getSimpleRatioSchemaType() :
ms_quant_integration
getSingleHit() :
ms_mascotresults_params
getSite() :
ms_quant_specificity
,
ms_quant_unmodified
,
ms_umod_specificity
getSiteAnalysisMD10Prob() :
ms_mascotoptions
getSiteFrom() :
ms_linker_site
getSiteSchemaType() :
ms_quant_specificity
,
ms_umod_specificity
,
ms_quant_unmodified
getSiteTo() :
ms_linker_site
getSkippedKeys() :
ms_protein_quant_ratio
getSLDatabaseNumbersOfReference() :
ms_mascotresfile
getSLFragmentTolerance() :
ms_mascotresfile
getSLFragmentToleranceUnit() :
ms_mascotresfile
getSLThresholdFromMinProbability() :
ms_peptidesummary
getSortedFinitePeptideRatioValues() :
ms_customquantitation
,
ms_ms2quantitation
,
ms_quantitation
getSortUnassigned() :
ms_mascotoptions
getSource() :
ms_quant_integration
,
ms_umod_xref
getSourceSchemaType() :
ms_quant_integration
,
ms_umod_xref
getSpecGroup() :
ms_umod_specificity
getSpecGroupSchemaType() :
ms_umod_specificity
getSpeciesFile() :
ms_taxonomyrules
getSpeciesFormatRegex() :
ms_taxonomyrules
getSpecificity() :
ms_quant_localdef
,
ms_umod_modification
getSpecificityBySite() :
ms_umod_modification
getSpecificityBySiteAndPosition() :
ms_umod_modification
getSpecificitySchemaType() :
ms_quant_localdef
,
ms_umod_modification
getSpectralLibraryDisplayOption() :
ms_distiller_data_search
getSpectraPerLibraryBlock() :
ms_mascotoptions
getSpectrumViewerColourSchemeNames() :
ms_mascotoptions
getSpectrumViewerColourSchemeString() :
ms_mascotoptions
getSpectrumViewerDefaultColourSchemeName() :
ms_mascotoptions
getSplitDataFileSize() :
ms_mascotoptions
getSplitNumberOfQueries() :
ms_mascotoptions
getSpoofableUsers() :
ms_session
getSrcDatabaseRule() :
ms_taxonomyrules
getSrcQueryAndFileIdForMultiFile() :
ms_mascotresfile
getSrcRank() :
ms_peptidesummary
getSrcSection() :
ms_peptidesummary
getStandardDeviation() :
ms_protein_quant_ratio
getStandardError() :
ms_protein_quant_ratio
getStart() :
ms_fragment
getStartDate() :
ms_license
getStartIndex() :
ms_xic
getStartScanId() :
ms_xic
getStatsInformation() :
ms_spectral_lib_file
getStatus() :
ms_progress_info
,
ms_ms1quant_match_ratio
,
ms_http_client_search
,
ms_ms1quant_peptide_status
getStatusList() :
ms_ms1quant_match_ratio
getStatusMsg() :
ms_distiller_search_status
getStrategy() :
ms_crosslinking_method
getStrategySchemaType() :
ms_crosslinking_method
getStreamNumber() :
ms_distiller_data_quant
getStrFile() :
ms_taxonomyrules
getStringIons1() :
ms_inputquery
getStringIons2() :
ms_inputquery
getStringIons3() :
ms_inputquery
getStringParam() :
ms_session
,
ms_group
,
ms_user
,
ms_session
,
ms_user
,
ms_group
getStringParams() :
ms_security_task
getStringTitle() :
ms_inputquery
getStrRule() :
ms_taxonomyrules
getSUBCLUSTER() :
ms_searchparams
getSubClusterID() :
ms_clusterparams
getSubClusterMaxCPU() :
ms_clusterparams
getSubmitTime() :
ms_distiller_search_status
getSubproject() :
ms_distiller_master_project
getSubsearch() :
ms_distiller_master_search
getSubtaskProgress() :
ms_progress_info
getSuffixRemove() :
ms_taxonomyrules
getSummary() :
ms_ms1quantitation
getSummedModsNlStr() :
ms_peptide
getSummedModsStr() :
ms_peptide
,
ms_ms1quant_match_component
getSVGSpectrumSwitch() :
ms_mascotoptions
getSymbol() :
ms_umod_elemref
,
ms_quant_element
getSymbolSchemaType() :
ms_umod_elemref
,
ms_quant_element
getSystemError() :
ms_http_helper_return
getTag() :
ms_inputquery
getTagDeltaRangeEnd() :
ms_peptidesummary
,
ms_mascotresults
,
ms_proteinsummary
getTagDeltaRangeStart() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getTagEnd() :
ms_mascotresults
getTagSeries() :
ms_mascotresults
getTagStart() :
ms_mascotresults
getTagString() :
ms_peptidesummary
,
ms_proteinsummary
,
ms_mascotresults
getTARGET_FDR_PERCENT() :
ms_searchparams
getTargetFDR() :
ms_mascotresults_params
getTargetFDRPercentage() :
ms_mascotoptions
getTargetFDRType() :
ms_mascotresults_params
getTask() :
ms_security_tasks
getTaskFromID() :
ms_security_tasks
getTaskId() :
ms_distiller_data_search
,
ms_distiller_search_status
,
ms_distiller_data_quant
,
ms_distiller_subsearch
getTasks() :
ms_security
getTaxBrowserUrl() :
ms_mascotoptions
getTaxIDArray() :
ms_taxonomytree
getTAXONOMY() :
ms_searchparams
getTaxonomy() :
ms_mascotresfile
getTaxonomyParseRuleIndex() :
ms_databaseoptions
getTaxonomyRules() :
ms_datfile
getTerminalResiduesString() :
ms_mascotresults
,
ms_peptidesummary
,
ms_proteinsummary
getTestDirectory() :
ms_mascotoptions
getText() :
ms_umod_xref
getTextSchemaType() :
ms_umod_xref
getThreadProcessorID() :
ms_dbprocessors
getThreeLetter() :
ms_umod_aminoacid
getThreeLetterSchemaType() :
ms_umod_aminoacid
getThresholdForFDRAboveHomology() :
ms_mascotresults
getThresholdForFDRAboveIdentity() :
ms_mascotresults
getTimeout() :
ms_session
getTimeParam() :
ms_session
getTitle() :
ms_distiller_subsearch
,
ms_unigene_entry
,
ms_enzyme
,
ms_distiller_search_status
,
ms_umod_element
,
ms_fragmentationrules
,
ms_umod_aminoacid
,
ms_umod_modbrick
,
ms_umod_modification
,
ms_modification
,
ms_taxonomychoice
,
ms_quant_localdef
getTitleSchemaType() :
ms_umod_aminoacid
,
ms_quant_localdef
,
ms_umod_modbrick
,
ms_umod_modification
,
ms_umod_element
getTOL() :
ms_searchparams
getToleranceInDa() :
ms_libraryoptions
getToleranceInDalton() :
ms_mascotresults
getToleranceInPPM() :
ms_libraryoptions
getTOLU() :
ms_searchparams
getTotal() :
ms_progress_info
getTotalBytes() :
ms_http_helper_progress
getTotalIntensity() :
ms_ms1quant_charge_state
getTotalIntensitySchemaType() :
ms_quant_quality
getTotalIntensityThreshold() :
ms_quant_quality
getTotalIntensityThresholdSchemaType() :
ms_quant_quality
getTotalIonsIntensity() :
ms_inputquery
getTotalSeriesOutput() :
ms_fragmentationrules
getTreeClusterNodes() :
ms_mascotresults
,
ms_peptidesummary
getType() :
ms_security_task
,
ms_quant_correction
,
ms_quant_protocol
,
ms_distiller_sub_project
,
ms_wwwentry
getTypeSchemaType() :
ms_quant_correction
getUnassigned() :
ms_mascotresults
getUnassignedIsBold() :
ms_mascotresults
getUnassignedShowCheckbox() :
ms_mascotresults
getUnigeneForAccession() :
ms_unigene
getUnigeneIndexFile() :
ms_mascotresults_params
getUniGeneOptions() :
ms_datfile
getUnimod() :
ms_mascotresfile
getUnimodXL() :
ms_mascotresfile
getUniqueJobStartNumber() :
ms_mascotoptions
getUniquePepseqSchemaType() :
ms_quant_quality
getUniqueTaskID() :
ms_mascotresfile
getUnixDirPerm() :
ms_mascotoptions
getUnixWebUserGroup() :
ms_mascotoptions
getUnmatchedAnnotationStr() :
ms_spectral_lib_peak
getUnmatchedMasses() :
ms_protein
getUnmodified() :
ms_quant_modgroup
getUnmodifiedSchemaType() :
ms_quant_modgroup
getUnnormalisedAveragePeptideRatio() :
ms_customquantitation
getUnZipped() :
ms_zip
getUnZippedLen() :
ms_zip
getUrl() :
ms_umod_xref
getUrlSchemaType() :
ms_umod_xref
getUser() :
ms_security
getUserAgent() :
ms_connection_settings
getUSEREMAIL() :
ms_searchparams
getUSERField() :
ms_searchparams
getUserFromID() :
ms_security
getUSERID() :
ms_searchparams
getUserID() :
ms_session
getUserName() :
ms_session
getUSERNAME() :
ms_searchparams
getUsernameOfPoster() :
ms_umod_modification
getUsernameOfPosterSchemaType() :
ms_umod_modification
getUserType() :
ms_user
,
ms_session
getUseSessionCookies() :
ms_security_options
getUseTimeShift() :
ms_xic
getValue() :
ms_xml_parameter
,
ms_crosslinking_monolink
,
ms_ms1quant_match_ratio
,
ms_peptide_quant_ratio
,
ms_protein_quant_ratio
,
ms_http_client_mime
,
ms_crosslinking_accession
getValueFromKey() :
ms_tinycdb
getValueSchemaType() :
ms_xml_parameter
,
ms_crosslinking_accession
,
ms_quant_parameter
,
ms_crosslinking_monolink
,
ms_crosslinking_parameter
getVarModIdxFrom() :
ms_linker_site
getVarModIdxOfLinkedSite() :
ms_linker_site_vector
getVarModIdxTo() :
ms_linker_site
getVarMods() :
ms_ms1quant_match
,
ms_aahelper
getVarModsDelta() :
ms_searchparams
getVarModsName() :
ms_searchparams
getVarModsNeutralLoss() :
ms_searchparams
getVarModsNeutralLosses() :
ms_searchparams
getVarModsPepNeutralLoss() :
ms_searchparams
getVarModsReqPepNeutralLoss() :
ms_searchparams
getVarModsStr() :
ms_peptide
,
ms_ms1quant_match_component
getVector() :
ms_fragmentvector
getVerifySessionIPAddress() :
ms_security_options
getVersion() :
ms_http_client
getVmemory() :
ms_mascotoptions
getWeight() :
ms_peptide_quant_ratio
getWhichAvailableForMascot() :
ms_processors
getWhichAvailableForMascot2() :
ms_processors
getWWWOptions() :
ms_datfile
getXic() :
ms_ms1quant_match_component
getXicMaxWidth() :
ms_quant_integration
getXicMaxWidthSchemaType() :
ms_quant_integration
getXicSmoothing() :
ms_quant_integration
getXicSmoothingSchemaType() :
ms_quant_integration
getXicThreshold() :
ms_quant_integration
getXicThresholdSchemaType() :
ms_quant_integration
getXmlCode() :
ms_ms1quant_match
,
ms_ms1quant_match_ratio
,
ms_xic
,
ms_ms1quant_peptide_status
getXMLschemaFilePath() :
ms_mascotresfile
getXref() :
ms_umod_modification
getXrefSchemaType() :
ms_umod_modification
getZipped() :
ms_zip
getZippedLen() :
ms_zip
Copyright © 2022
Matrix Science Ltd.
All Rights Reserved. Generated on Thu Mar 31 2022 01:12:30