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save_buffer() :
ms_crosslinking_configfile
,
ms_quant_configfile
,
ms_umod_configfile
save_file() :
ms_crosslinking_configfile
,
ms_masses
,
ms_modfile
,
ms_datfile
,
ms_quant_configfile
,
ms_taxonomyfile
,
ms_enzymefile
,
ms_umod_configfile
,
ms_fragrulesfile
saveAs() :
ms_spectral_lib_file
saveBoolParam() :
ms_session
saveCdbFile() :
ms_ms2quantitation
,
ms_ms1quantitation
saveDoubleParam() :
ms_session
saveFileOffsetForKey() :
ms_tinycdb
saveIntForKey() :
ms_tinycdb
saveIntParam() :
ms_session
saveLongParam() :
ms_session
saveStringParam() :
ms_group
,
ms_session
,
ms_user
saveTimeParam() :
ms_session
saveToFile() :
ms_security_tasks
saveToString() :
ms_modfile
saveValueForKey() :
ms_tinycdb
saveXmlFile() :
ms_ms1quantitation
,
ms_ms2quantitation
serverVersionNewerOrSameAs() :
ms_distiller_data_search
sessionId() :
ms_http_client_search
set() :
ms_linker_site_vector
,
ms_peptide_quant_key_vector
setAbort() :
ms_http_helper_progress
setAccession() :
ms_quant_normalisation_protein
setAccessionParseRuleIndex() :
ms_databaseoptions
setAccessionRefParseRuleIndex() :
ms_databaseoptions
setAccessions() :
ms_crosslinking_method
setAccessRights() :
ms_fileutilities
setAccFromSpeciesLine() :
ms_taxonomyrules
setAccountEnabled() :
ms_user
setActive() :
ms_databaseoptions
setAllChargeStates() :
ms_quant_integration
setAllChargeStatesThreshold() :
ms_quant_integration
setAllowElutionShift() :
ms_quant_integration
setAllowMassTimeMatch() :
ms_quant_precursor
setAnnotation() :
ms_spectral_lib_peak
setAnnotationLevel() :
ms_spectral_lib_peak_list
setAPI() :
ms_errs
setApproved() :
ms_umod_modification
setAutoSelectCharge() :
ms_mascotoptions
setAvailable() :
ms_parserule
setAvailableModifications() :
ms_aahelper
setAverage() :
ms_quant_moverz
,
ms_quant_protocol
setAverageNumPeptides() :
ms_ms1quantitation
setAverageReferenceProtein() :
ms_ms1quantitation
setAverageSelection() :
ms_ms1quantitation
setAvgeMass() :
ms_umod_aminoacid
,
ms_umod_composition
,
ms_umod_element
,
ms_umod_modbrick
setBaseUrl() :
ms_http_client
setBreak() :
ms_progress_info
setCacheDirectory() :
ms_mascotoptions
setCarbonMass() :
ms_masses
setCentroidWidth() :
ms_mascotoptions
setCentroidWidthCount() :
ms_mascotoptions
setCharged2Plus() :
ms_fragmentationrules
setCharged3Plus() :
ms_fragmentationrules
setCheckNodesAliveFreq() :
ms_clusterparams
setChopSource() :
ms_parserule_plus
setClassification() :
ms_umod_specificity
setClusterParams() :
ms_datfile
setCode() :
ms_umod_neutralloss
setCoefficient() :
ms_quant_numerator
setColsToOutput() :
ms_logger
setColumnDown() :
ms_matrix
setColumnUp() :
ms_matrix
setCombinedReportRatio() :
ms_ms2quantitation
setCombineRepeats() :
ms_errs
setCommandStr() :
ms_cronjob
setComp() :
ms_quant_method
setCompositionString() :
ms_umod_composition
setCompressToolAA() :
ms_mascotoptions
setCompressToolNA() :
ms_mascotoptions
setCompressToolSL() :
ms_mascotoptions
setConcatRefFileLines() :
ms_taxonomyrules
setConnectionSettings() :
ms_crosslinking_configfile
,
ms_datfile
,
ms_enzymefile
,
ms_fragrulesfile
,
ms_http_client
,
ms_masses
,
ms_modfile
,
ms_quant_configfile
,
ms_taxonomyfile
,
ms_umod_configfile
setConnectionTimeout() :
ms_connection_settings
setConstrainSearch() :
ms_quant_method
setContent() :
ms_quant_correction
,
ms_quant_numerator
,
ms_quant_unmodified
setCR() :
ms_matrix
setCrawlerNumPeaksPer100Da() :
ms_mascotoptions
setCreatePipThreadBlockSize() :
ms_mascotoptions
setCreatePipThreads() :
ms_mascotoptions
setCronEnabled() :
ms_cronoptions
setCronJob() :
ms_cronoptions
setCronOptions() :
ms_datfile
setCTerminusMass() :
ms_modification
setCtermModification() :
ms_masses
setDatabaseName() :
ms_crosslinking_accession
setDatabases() :
ms_datfile
setDateTimeModified() :
ms_umod_modification
setDateTimePosted() :
ms_umod_modification
setDayOfMonth() :
ms_cronjob
setDayOfWeek() :
ms_cronjob
setDB() :
ms_protein
setDBLevelTaxId() :
ms_taxonomyrules
setDBType() :
ms_databaseoptions
setDechargeFragmentPeaks() :
ms_mascotoptions
setDecoyTypeNoEnzyme() :
ms_mascotoptions
setDecoyTypeSpecific() :
ms_mascotoptions
setDefaultDelimiter() :
ms_customproperty
setDefaultMonitor() :
ms_loggingmonitor
setDefaultNodeHomeDir() :
ms_clusterparams
setDefaultNodeHomeDirFromMaster() :
ms_clusterparams
setDefaultNodeOS() :
ms_clusterparams
setDefaultPasswordExpiryTime() :
ms_security_options
setDefaultPort() :
ms_clusterparams
setDefaultRule() :
ms_taxonomyrules
setDefaultTargetFDRPercentage() :
ms_mascotoptions
setDelta() :
ms_modification
,
ms_quant_localdef
,
ms_umod_modification
setDescription() :
ms_crosslinking_method
,
ms_quant_method
,
ms_umod_neutralloss
,
ms_xml_parameter
setDescriptionLineSep() :
ms_taxonomyrules
setDescriptionParseRuleIndex() :
ms_databaseoptions
setDisplayNonSignificantMatches() :
ms_mascotoptions
setDoThisRuleFirst() :
ms_taxonomyrules
setElectronMass() :
ms_masses
setElement() :
ms_quant_correction
setElutionProfileCorrelationThreshold() :
ms_quant_integration
setElutionTimeDelta() :
ms_quant_integration
setElutionTimeDeltaUnit() :
ms_quant_integration
setEmailAddress() :
ms_user
setEmailErrorsEnabled() :
ms_mascotoptions
setEmailFromTextName() :
ms_mascotoptions
setEmailFromUser() :
ms_mascotoptions
setEmailPassword() :
ms_mascotoptions
setEmailProfile() :
ms_mascotoptions
setEmailService() :
ms_mascotoptions
setEmailTimeOutPeriod() :
ms_mascotoptions
setEmailUsersEnabled() :
ms_mascotoptions
setEnabled() :
ms_clusterparams
,
ms_cronjob
,
ms_taxonomyrules
setEncryptedPassword() :
ms_user
setEntry() :
ms_wwwoptions
setEnzyme() :
ms_aahelper
setEnzymes() :
ms_mascotfiles
setErrMessageEmailTo() :
ms_mascotoptions
setErrorLevel() :
ms_taxonomyrules
setErrorLogFile() :
ms_mascotoptions
setErrTolMaxAccessions() :
ms_mascotoptions
setExcludeInternalLabel() :
ms_quant_multiplex
setExcludeIsobaricFragments() :
ms_quant_multiplex
setExecAfterSearch() :
ms_mascotoptions
setFeatureTableLength() :
ms_mascotoptions
setFeatureTableMinScore() :
ms_mascotoptions
setFileIndex() :
ms_quant_component
setFileName() :
ms_crosslinking_configfile
,
ms_datfile
,
ms_enzymefile
,
ms_fragrulesfile
,
ms_license
,
ms_masses
,
ms_modfile
,
ms_quant_configfile
,
ms_taxonomyfile
,
ms_taxspeciesfiles
,
ms_taxnodesfiles
,
ms_umod_configfile
setFileTypeToSearch() :
ms_parserule_plus
setFilters() :
ms_crosslinking_method
setFindFileTimeout() :
ms_datfile
setFlag() :
ms_mascotresults_params
,
ms_quant_neutralloss
,
ms_umod_neutralloss
setFlag2() :
ms_mascotresults_params
setFlags() :
ms_mascotresults_params
setFlags2() :
ms_mascotresults_params
setForkForUnixApache() :
ms_mascotoptions
setFormat() :
ms_taxspeciesfiles
,
ms_taxnodesfiles
setFormVersion() :
ms_mascotoptions
setFrequencies() :
ms_mascotfiles
setFromRefFile() :
ms_taxonomyrules
setFromSubstitutions() :
ms_modfile
setFullName() :
ms_user
,
ms_umod_aminoacid
,
ms_umod_element
,
ms_umod_modbrick
,
ms_umod_modification
setGetSeqBlastAccession() :
ms_mascotoptions
setGetSeqJobIdFile() :
ms_mascotoptions
setGroupOfPoster() :
ms_umod_modification
setHeaderComments() :
ms_datfile
setHidden() :
ms_modification
,
ms_umod_specificity
setHitRatioExcluded() :
ms_ms1quant_match
setHitRatioOutlier() :
ms_ms1quant_match
setHostName() :
ms_computeraddress
,
ms_wwwentry
setHour() :
ms_cronjob
setHttpPassword() :
ms_connection_settings
setHttpProtocol() :
ms_connection_settings
setHttpUsername() :
ms_connection_settings
setHydrogenMass() :
ms_masses
setICATFilter() :
ms_mascotoptions
setICATHeavy() :
ms_mascotoptions
setICATLight() :
ms_mascotoptions
setICATQuantitationMethod() :
ms_mascotoptions
setID() :
ms_group
,
ms_user
setIdentifier() :
ms_taxonomyrules
setIgnoreDupeAccession() :
ms_mascotoptions
setIgnoreIonsScoreBelow() :
ms_mascotoptions
,
ms_mascotresults_params
setIndependent() :
ms_enzyme
setIndexFileName() :
ms_tinycdb
setInErrorTolerant() :
ms_modification
setInetAddress() :
ms_computeraddress
setInLongList() :
ms_modification
setInShortList() :
ms_modification
setIntegraAppServerURL() :
ms_security_options
setIntegraDatabaseName() :
ms_security_options
setIntegraOracleServerName() :
ms_security_options
setIntegration() :
ms_quant_method
setIntensityNormalisationBase() :
ms_ms2quantitation
setIntensitySigFigs() :
ms_mascotoptions
setInterFileBasePath() :
ms_mascotoptions
setInterFileRelPath() :
ms_mascotoptions
setIonIntensityThreshold() :
ms_quant_multiplex
setIonsDecimalPlaces() :
ms_mascotoptions
setIonSeries() :
ms_quant_multiplex
setIPCLogfile() :
ms_clusterparams
setIPCLogging() :
ms_clusterparams
setIPCTimeout() :
ms_clusterparams
setIsolatedPrecursor() :
ms_quant_quality
setIsolatedPrecursorThreshold() :
ms_quant_quality
setIteratePMFIntensities() :
ms_mascotoptions
setLabelAll() :
ms_mascotoptions
setLastModificationTime() :
ms_fileutilities
setLastQueryAscFile() :
ms_mascotoptions
setLibraryOptions() :
ms_datfile
setLinkers() :
ms_crosslinking_method
setLocalModsStr() :
ms_peptide
setLocalRefFile() :
ms_databaseoptions
setLockMemory() :
ms_databaseoptions
setLogFileName() :
ms_cronoptions
,
ms_security_options
setLoggingFile() :
ms_errs
setLoggingLevel() :
ms_cronoptions
,
ms_errs
,
ms_security_options
setLogMask() :
ms_loggingmonitor
setLogoImageFile() :
ms_mascotoptions
setMailTempFile() :
ms_mascotoptions
setMailTransport() :
ms_mascotoptions
setMajorVersion() :
ms_umod_configfile
setMascNodeCtrlFile() :
ms_mascotoptions
setMascotCmdLine() :
ms_mascotoptions
setMascotControlFile() :
ms_mascotoptions
setMascotFileProcessingThreads() :
ms_mascotoptions
setMascotFiles() :
ms_datfile
setMascotJobIdFile() :
ms_mascotoptions
setMascotMessage() :
ms_mascotoptions
setMascotNodeRebootScript() :
ms_clusterparams
setMascotNodeScript() :
ms_clusterparams
setMascotOptions() :
ms_datfile
setMassDecimalPlaces() :
ms_mascotoptions
setMassDelta() :
ms_quant_integration
setMassDeltaUnit() :
ms_quant_integration
setMasses() :
ms_aahelper
setMassFile() :
ms_modification
,
ms_modfile
setMasterComputer() :
ms_clusterparams
setMatchedIon() :
ms_fragment
setMatchedRho() :
ms_quant_integration
setMatchOppositeCrosslinkPairs() :
ms_mascotoptions
setMaxConcurrentSearches() :
ms_mascotoptions
setMaxDatabases() :
ms_mascotoptions
setMaxDescriptionLen() :
ms_mascotoptions
setMaxEtagMassDelta() :
ms_mascotoptions
setMaxEtVarMods() :
ms_mascotoptions
setMaxHitsToReport() :
ms_mascotresults_params
setMaxIntactCrosslinkPeptides() :
ms_mascotoptions
setMaxInternalMass() :
ms_fragmentationrules
setMaxNumPeptides() :
ms_mascotoptions
setMaxPepModArrangements() :
ms_mascotoptions
setMaxPepNumModifiedSites() :
ms_mascotoptions
setMaxPepNumVarMods() :
ms_mascotoptions
setMaxQueries() :
ms_mascotoptions
setMaxSearchesPerUser() :
ms_mascotoptions
setMaxSequenceLen() :
ms_mascotoptions
setMaxVarMods() :
ms_mascotoptions
setMemoryMapFiles() :
ms_databaseoptions
setMethod() :
ms_quant_integration
,
ms_quant_normalisation
,
ms_quant_outliers
setMinEtagMassDelta() :
ms_mascotoptions
setMinimumA1() :
ms_quant_quality
setMinimumPasswordLength() :
ms_security_options
setMinInternalMass() :
ms_fragmentationrules
setMinIonPairs() :
ms_quant_multiplex
setMinNumPeptides() :
ms_quant_method
,
ms_quantitation
setMinNumSigUniqueSequences() :
ms_mascotresults_params
setMinorVersion() :
ms_umod_configfile
setMinPepLenInPepSummary() :
ms_mascotoptions
setMinPepLenInPeptideSummary() :
ms_mascotresults_params
setMinPepLenInSearch() :
ms_mascotoptions
setMinPrecursorCharge() :
ms_quant_quality
setMinProbability() :
ms_mascotresults_params
setMinute() :
ms_cronjob
setMiscNotes() :
ms_umod_modification
,
ms_umod_specificity
setMitochondrialTranslation() :
ms_taxonomyrules
setMode() :
ms_quant_modgroup
setModFileName() :
ms_crosslinking_does_not_pair_with
,
ms_crosslinking_linker
setModifications() :
ms_mascotfiles
,
ms_quant_satellite
setModificationType() :
ms_modification
setMonitorEmailCheckFreq() :
ms_mascotoptions
setMonitorLogFile() :
ms_mascotoptions
setMonitorPidFile() :
ms_mascotoptions
setMonitorTestTimeout() :
ms_mascotoptions
setMonoisotopic() :
ms_quant_moverz
setMonoMass() :
ms_umod_composition
,
ms_umod_aminoacid
,
ms_umod_element
,
ms_umod_modbrick
setMonthOfYear() :
ms_cronjob
setMoveOldDbToOldDir() :
ms_mascotoptions
setMoverz() :
ms_quant_component
setMudpit() :
ms_mascotoptions
setMudpitSwitch() :
ms_mascotoptions
setMultiplex() :
ms_quant_protocol
setName() :
ms_xml_parameter
,
ms_quant_ratio
,
ms_quant_component
,
ms_crosslinking_method
,
ms_databaseoptions
,
ms_dbprocessors
,
ms_quant_method
,
ms_quant_modgroup
,
ms_quant_numerator
,
ms_group
,
ms_user
,
ms_wwwentry
setNameOfDB() :
ms_parserule_plus
setNeutralLoss() :
ms_modification
setNew() :
ms_quant_isotope
setNitrogenMass() :
ms_masses
setNodeListFile() :
ms_mascotfiles
setNodeSequenceDatabaseDir() :
ms_clusterparams
setNoResultsScript() :
ms_mascotoptions
setNormalisation() :
ms_quant_method
setNTerminusMass() :
ms_modification
setNtermModification() :
ms_masses
setNTIUserGroup() :
ms_mascotoptions
setNTMonitorGroup() :
ms_mascotoptions
setNull() :
ms_quant_protocol
setNumber() :
ms_quant_element
,
ms_umod_elemref
setNumberOfThreads() :
ms_databaseoptions
setNumPeptides() :
ms_quant_average
setOld() :
ms_quant_isotope
setOutliers() :
ms_quant_method
setOxygenMass() :
ms_masses
setPairsWith() :
ms_umod_neutralloss
setParams() :
ms_security_task
setParseOptions() :
ms_datfile
setParseRule() :
ms_parseoptions
,
ms_wwwentry
setPassword() :
ms_user
setPasswordExpiry() :
ms_user
setPath() :
ms_databaseoptions
,
ms_wwwentry
setPepNeutralLoss() :
ms_modification
setPepSearchTool() :
ms_mascotoptions
setPepThresholdType() :
ms_quant_quality
setPepThresholdValue() :
ms_quant_quality
setPeptideIsBold() :
ms_protein
setPeptideRatioExcluded() :
ms_customquantitation
,
ms_ms2quantitation
,
ms_quantitation
setPeptideRatioIncluded() :
ms_customquantitation
,
ms_ms2quantitation
,
ms_quantitation
setPeptideRatioNormalisationBase() :
ms_quantitation
setPeptides() :
ms_quant_normalisation
setPeptideShowCheckbox() :
ms_protein
setPercolator() :
ms_mascotoptions
setPercolatorExeFlags() :
ms_mascotoptions
setPercolatorFeatures() :
ms_mascotoptions
,
ms_mascotresfile
setPercolatorMinQueries() :
ms_mascotoptions
setPercolatorMinSequences() :
ms_mascotoptions
setPercolatorTargetRankRelativeThreshold() :
ms_mascotoptions
setPercolatorTargetRankScoreThreshold() :
ms_mascotoptions
setPercolatorUseProteins() :
ms_mascotoptions
setPercolatorUseRT() :
ms_mascotoptions
setPermittedTasks() :
ms_group
,
ms_session
setPort() :
ms_computeraddress
setPortNumber() :
ms_wwwentry
setPosition() :
ms_quant_specificity
,
ms_umod_specificity
,
ms_quant_unmodified
setPreceedingComments() :
ms_customproperty
,
ms_databaseoptions
setPrecursor() :
ms_quant_protocol
setPrecursorCutOutLowerLimit() :
ms_mascotoptions
setPrecursorCutOutUpperLimit() :
ms_mascotoptions
setPrecursorRange() :
ms_quant_integration
setPrivacyEnabled() :
ms_umod_modification
setPrivate() :
ms_umod_modification
setProcessingOptions() :
ms_quant_integration
setProcessors() :
ms_datfile
setPropertyName() :
ms_customproperty
setPropValBoolByName() :
ms_customproperty
setPropValCharByName() :
ms_customproperty
setPropValFloatByName() :
ms_customproperty
setPropValInt64ByName() :
ms_customproperty
setPropValIntByName() :
ms_customproperty
setPropValStringByName() :
ms_customproperty
setPropValStringByNumber() :
ms_customproperty
setProteinFamilySwitch() :
ms_mascotoptions
setProteinRatioType() :
ms_quantitation
,
ms_customquantitation
,
ms_ms2quantitation
,
ms_quant_method
setProteins() :
ms_quant_normalisation
setProteinsInResultsFile() :
ms_mascotoptions
setProtocol() :
ms_quant_method
setProtScoreType() :
ms_quant_method
setProxyPassword() :
ms_connection_settings
,
ms_mascotoptions
setProxyServer() :
ms_mascotoptions
,
ms_connection_settings
setProxyServerType() :
ms_connection_settings
setProxyType() :
ms_mascotoptions
setProxyUsername() :
ms_mascotoptions
,
ms_connection_settings
setQuality() :
ms_quant_method
setQuantNormalisation() :
ms_ms2quantitation
setQuantOutliers() :
ms_ms2quantitation
,
ms_customquantitation
,
ms_quantitation
setQuickRefSearch() :
ms_taxonomyrules
setRC() :
ms_matrix
setRecordID() :
ms_umod_modification
setRedirectPolicy() :
ms_connection_settings
setReferenceAccession() :
ms_quant_average
setReferenceAmount() :
ms_quant_average
setReferenceDatabase() :
ms_quant_average
setReferenceFasta() :
ms_libraryoptions
setRemoveOldIndexFiles() :
ms_mascotoptions
setReplicate() :
ms_quant_protocol
setReportBuilderColumnArrangement() :
ms_mascotoptions
setReportDetail() :
ms_quant_method
setReporter() :
ms_quant_protocol
setReporterTol() :
ms_quant_reporter
setReporterTolUnit() :
ms_quant_reporter
setReportNumberChoice() :
ms_mascotoptions
setReportRatioInFile() :
ms_ms2quantitation
setReqPepNeutralLoss() :
ms_modification
setRequireBoldRed() :
ms_mascotoptions
,
ms_quant_method
setRequired() :
ms_quant_modgroup
,
ms_quant_pepneutralloss
setResfileCache() :
ms_mascotoptions
setResidueMasses() :
ms_masses
setResidueModification() :
ms_masses
setResultsCache() :
ms_mascotoptions
setResultsFileFormatVersion() :
ms_mascotoptions
setResultsFullURL() :
ms_mascotoptions
setResultsFullURL_2() :
ms_mascotoptions
setResultsPerlScript() :
ms_mascotoptions
setResultsPerlScript_2() :
ms_mascotoptions
setReviewColDisplay() :
ms_mascotoptions
setReviewColWidth() :
ms_mascotoptions
setRow() :
ms_treecluster
setRule() :
ms_parserule_plus
setRuleStr() :
ms_parserule
setSatellite() :
ms_quant_component
setSaveEveryLastQueryAsc() :
ms_mascotoptions
setSaveLastQueryAsc() :
ms_mascotoptions
setSchemaDirectory() :
ms_quant_configfile
setSchemaFileName() :
ms_quant_configfile
,
ms_umod_configfile
,
ms_crosslinking_configfile
setScope() :
ms_crosslinking_method
setSearchLogFile() :
ms_mascotoptions
setSearchSubmitMode() :
ms_mascotoptions
setSecsToWaitForNodeAtStartup() :
ms_clusterparams
setSectionAvailable() :
ms_clusterparams
,
ms_mascotoptions
,
ms_processoroptions
,
ms_unigeneoptions
,
ms_taxonomyrules
,
ms_parseoptions
,
ms_cronoptions
,
ms_databases
,
ms_libraryoptions
,
ms_wwwoptions
setSecurityEnabled() :
ms_security_options
setSelection() :
ms_quant_average
setSelectSwitch() :
ms_mascotoptions
setSemiSpecific() :
ms_enzyme
setSendmailPath() :
ms_mascotoptions
setSeparateLockMem() :
ms_mascotoptions
setSequence() :
ms_quant_normalisation_peptide
setSeriesUsed() :
ms_fragmentationrules
setSessionID() :
ms_connection_settings
setSessionTimeout() :
ms_security_options
setSettings() :
ms_crosslinking_method
setShift() :
ms_quant_correction
setShowAllFromErrorTolerant() :
ms_mascotoptions
setShowSubsets() :
ms_mascotoptions
setShowSubSets() :
ms_quant_method
setShowSubsets() :
ms_mascotoptions
setSigThreshold() :
ms_mascotoptions
setSigThresholdValue() :
ms_quant_method
setSimpleRatio() :
ms_quant_integration
setSingleHit() :
ms_mascotresults_params
setSinglyCharged() :
ms_fragmentationrules
setSite() :
ms_quant_unmodified
,
ms_quant_specificity
,
ms_umod_specificity
setSiteAnalysisMD10Prob() :
ms_mascotoptions
setSortUnassigned() :
ms_mascotoptions
setSource() :
ms_quant_integration
,
ms_umod_xref
setSpecGroup() :
ms_umod_specificity
setSpeciesFormatRegex() :
ms_taxonomyrules
setSpectraPerLibraryBlock() :
ms_mascotoptions
setSpectrumViewerColourSchemeString() :
ms_mascotoptions
setSpectrumViewerDefaultColourSchemeName() :
ms_mascotoptions
setSplitDataFileSize() :
ms_mascotoptions
setSplitNumberOfQueries() :
ms_mascotoptions
setSrcDatabaseRule() :
ms_taxonomyrules
setStoreModPermutations() :
ms_mascotoptions
setStrategy() :
ms_crosslinking_method
setStrRule() :
ms_taxonomyrules
setSubsetsThreshold() :
ms_mascotresults
setSummedModsStr() :
ms_peptide
setSVGSpectrumSwitch() :
ms_mascotoptions
setSymbol() :
ms_umod_elemref
,
ms_quant_element
setTargetFDR() :
ms_mascotresults_params
setTargetFDRPercentage() :
ms_mascotoptions
setTargetFDRType() :
ms_mascotresults_params
setTaxBrowserUrl() :
ms_mascotoptions
setTaxonomyParseRuleIndex() :
ms_databaseoptions
setTaxonomyRules() :
ms_datfile
setTestDirectory() :
ms_mascotoptions
setText() :
ms_umod_xref
setThreeLetter() :
ms_umod_aminoacid
setTitle() :
ms_fragmentationrules
,
ms_enzyme
,
ms_quant_localdef
,
ms_umod_element
,
ms_modification
,
ms_umod_aminoacid
,
ms_umod_modification
,
ms_umod_modbrick
,
ms_taxonomychoice
setTitleSource() :
ms_modification
setToleranceInDa() :
ms_libraryoptions
setToleranceInPPM() :
ms_libraryoptions
setTotalIntensity() :
ms_quant_quality
setTotalIntensityThreshold() :
ms_quant_quality
setType() :
ms_quant_correction
,
ms_wwwentry
setUnigeneIndexFile() :
ms_mascotresults_params
setUniGeneOptions() :
ms_datfile
setUniqueJobStartNumber() :
ms_mascotoptions
setUniquePepseq() :
ms_quant_quality
setUnixDirPerm() :
ms_mascotoptions
setUnixWebUserGroup() :
ms_mascotoptions
setUrl() :
ms_umod_xref
setUseHTTPProxyForFTP() :
ms_connection_settings
,
ms_mascotoptions
setUseHTTPProxyForHTTPS() :
ms_mascotoptions
,
ms_connection_settings
setUsePeptideSummary() :
ms_mascotresults_params
setUserAgent() :
ms_connection_settings
setUsernameOfPoster() :
ms_umod_modification
setUserType() :
ms_user
setUseSessionCookies() :
ms_security_options
setValue() :
ms_xml_parameter
,
ms_crosslinking_monolink
,
ms_crosslinking_accession
,
ms_http_client_mime
setValueWithFilename() :
ms_http_client_mime
setVarModsStr() :
ms_peptide
setVerifySessionIPAddress() :
ms_security_options
setVmemory() :
ms_mascotoptions
setWWWOptions() :
ms_datfile
setXicMaxWidth() :
ms_quant_integration
setXicSmoothing() :
ms_quant_integration
setXicThreshold() :
ms_quant_integration
setXMLschemaFilePath() :
ms_mascotresfile
severityAsText() :
ms_loggingmonitor
showInLongList() :
ms_umod_specificity
showInShortList() :
ms_umod_specificity
size() :
ms_peptide_quant_key_vector
,
ms_linker_site_vector
sizei() :
ms_matrix
sizej() :
ms_matrix
snedecorsCriticalValue() :
ms_quant_stats
sortedMedian() :
ms_quant_stats
sortModifications() :
ms_modfile
sortPeptides() :
ms_protein
sortUsers() :
ms_security
startIteratePeptides() :
ms_aahelper
staticGetPercolatorFileNames() :
ms_mascotresfile
stopIteratePeptides() :
ms_aahelper
stripLastFolder() :
ms_fileutilities
studentsCriticalValue() :
ms_quant_stats
submitSearch() :
ms_http_client_session
sum() :
ms_quant_stats
sumsq() :
ms_quant_stats
swap() :
ms_linker_site_vector
,
ms_peptide_quant_key_vector
swilk() :
ms_shapiro_wilk
systemError() :
ms_http_helper_return
Copyright © 2022
Matrix Science Ltd.
All Rights Reserved. Generated on Thu Mar 31 2022 01:12:30