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Classes | |
| class | ms_customquantitation |
| Peptide and protein quantitation using custom peptide ratios and protein-peptide mappings. More... | |
| class | ms_distiller_data |
| Distiller project parameters. More... | |
| class | ms_distiller_data_quant |
| The details of a Distiller search. More... | |
| class | ms_distiller_data_search |
| The details of a Distiller search. More... | |
| class | ms_distiller_master_project |
| Data for a Distiller master project, includes a list of the subprojects. More... | |
| class | ms_distiller_master_search |
| The details of a Distiller multifile search. More... | |
| class | ms_distiller_search_status |
| A Mascot search status from a Distiller project file. More... | |
| class | ms_distiller_search_status_list |
| A list of Mascot search status values, typically stored in a Distiller project file. More... | |
| class | ms_distiller_sub_project |
| The details of a Distiller multifile subproject. More... | |
| class | ms_distiller_subsearch |
| The details of a Distiller multifile subsearch. More... | |
| class | ms_fitexy_result |
| Parameters and results from least squares fit with errors in both co-ordinates. More... | |
| class | ms_ms1quant_average_results |
| Results specific to an 'average' type quantitation method. More... | |
| class | ms_ms1quant_charge_state |
| A result from a charge state calculation. More... | |
| class | ms_ms1quant_match |
| A peptide that has been matched, in quantitation, to a protein hit. More... | |
| class | ms_ms1quant_match_component |
| A component within a match. More... | |
| class | ms_ms1quant_match_range |
| A range for a component of a peptide match. More... | |
| class | ms_ms1quant_match_ratio |
| The status resulting ratio for a peptide found in a match. More... | |
| class | ms_ms1quant_peptide_status |
| An individual peptide's quantitation status. More... | |
| class | ms_ms1quantitation |
| The result of quantitation calculations applied to peptide summary. More... | |
| class | ms_ms2quantitation |
| Peptide and protein quantitation in a Reporter or Multiplex Mascot results file. More... | |
| class | ms_peptide_quant_key |
| Feature key identifying a peptide ratio. More... | |
| class | ms_peptide_quant_key_vector |
| A vector of peptide quant keys. More... | |
| class | ms_peptide_quant_ratio |
| Peptide abundance in one component relative to another in a quantitation experiment. More... | |
| class | ms_progress_info |
| Contains information of the current progress of a task being performed. More... | |
| class | ms_protein_quant_ratio |
| Protein abundance in one component relative to another in a quantitation experiment, derived from a sample of peptide ratios. More... | |
| class | ms_quant_helper |
| Helper routines for peptide quantitation. More... | |
| class | ms_quant_stats |
| Mathematical and statistical routines for peptide and protein quantitation. More... | |
| class | ms_quantitation |
| Base class for peptide and protein quantitation. More... | |
| class | ms_shapiro_wilk |
| The Shapiro-Wilk W test. More... | |
| class | ms_xic |
| An eXtracted Ion Chromatogram (XIC). More... | |
| class | ms_xic_point |
| A single point from a matrix_science::ms_xic object. More... | |
Modules | |
| Peptide and protein quantitation | |
| Accessing Distiller Quantitation Results | |
| Accessing Distiller Multi-file Quantitation Results | |
| Extracting quantitation results with the Distiller toolkit | |
| Source code for the Shapiro-Wilk W test algorithm | |
| Examples for the Mascot Parser quantitation module | |
Classes for handling the quantitation configuration files are in Mascot configuration files module
The statistics modules are used for the quantitation functions in both Mascot server and Mascot Distiller.
| Copyright © 2022 Matrix Science Ltd. All Rights Reserved. Generated on Thu Mar 31 2022 01:12:30 |