ms_linker_site.hpp

/*
##############################################################################
# file: ms_linker_site.hpp                                                   #
# 'msparser' toolkit                                                         #
# Linker site used in ms_peptide                                             #
##############################################################################
# COPYRIGHT NOTICE                                                           #
# Copyright 1998-2018 Matrix Science Limited  All Rights Reserved.           #
#                                                                            #
##############################################################################
#     $Author: villek@matrixscience.com $ #
#       $Date: 2020-01-23 19:01:43 +0000 $ #
#   $Revision: #
# $NoKeywords::                                                            $ #
##############################################################################
*/

#ifndef MS_LINKERSITE_HPP
#define MS_LINKERSITE_HPP


// Includes from the standard template library
#include <string>

namespace matrix_science {
    class ms_peptide;
    


    class MS_MASCOTRESFILE_API ms_linker_site
    {
        public:
            ms_linker_site();

            ms_linker_site(ms_peptide::PSM linkFrom,
                           ms_peptide::PSM linkTo,
                           int siteFrom,
                           int siteTo,
                           int varModIdxFrom,
                           int varModIdxTo,
                           double linkerMass);

            ms_linker_site(const ms_linker_site& src);

            ~ms_linker_site();

#ifndef SWIG

            ms_linker_site& operator=(const ms_linker_site& right);

            bool operator<(const ms_linker_site &right) const;
#endif

            void copyFrom(const ms_linker_site *right);

            int getSiteFrom() const;
            
            int getSiteTo() const;
            
            int getVarModIdxFrom() const;

            int getVarModIdxTo() const;

            ms_peptide::PSM getLinkFrom() const;
            
            ms_peptide::PSM getLinkTo() const;
            
            double getLinkerMass() const;

        private:
            ms_peptide::PSM linkFrom_, linkTo_;
            int siteFrom_, siteTo_;
            int varModIdxFrom_, varModIdxTo_;
            double linkerMr_;
    }; // end of resfile_group
}   // matrix_science namespace

#endif // MS_LINKERSITE_HPP

/*------------------------------- End of File -------------------------------*/