ms_quant_normalisation.hpp

/*
##############################################################################
# file: ms_quant_normalisation.hpp                                           #
# 'msparser' toolkit                                                         #
# Encapsulates normalisation-element from "quantitation.xml"-file            #
##############################################################################
# COPYRIGHT NOTICE                                                           #
# Copyright 1998-2006 Matrix Science Limited  All Rights Reserved.           #
#                                                                            #
##############################################################################
 * @(#)$Source: parser/inc/ms_quant_normalisation.hpp $
 * @(#)$Revision: 1b450440f9c97e1e41d0fc6016a27d68951d4532 | MSPARSER_REL_2_8_1-0-gea32989045 $
 * @(#)$Date: 2018-07-30 16:23:53 +0100 $
##############################################################################
 */

#ifndef MS_QUANT_NORMALISATION_HPP
#define MS_QUANT_NORMALISATION_HPP


// forward declarations
namespace msparser_internal {
    class ms_quant_xmlloader;
}

namespace matrix_science {

    class ms_xml_schema; // forward declaration
    class ms_quant_normalisation_peptides; // forward declaration
    class ms_quant_normalisation_proteins; // forward declaration



    class MS_MASCOTRESFILE_API ms_quant_normalisation: public ms_quant_parameters
    {
        friend class msparser_internal::ms_quant_xmlloader;

    public:
        ms_quant_normalisation();

        ms_quant_normalisation(const ms_quant_normalisation& src);

        virtual ~ms_quant_normalisation();

        void defaultValues();

        void copyFrom(const ms_quant_normalisation* right);

#ifndef SWIG

        ms_quant_normalisation& operator=(const ms_quant_normalisation& right);
#endif

        virtual std::string getSchemaType() const;

        virtual std::string validateShallow(const ms_xml_schema *pSchemaFileObj) const;

        virtual std::string validateDeep(const ms_xml_schema *pSchemaFileObj) const;


        bool haveMethod() const;

        std::string getMethod() const;

        void setMethod(const char* value);

        void dropMethod();

        std::string getMethodSchemaType() const;


        bool havePeptides() const;

        const ms_quant_normalisation_peptides* getPeptides() const;

        void setPeptides(const ms_quant_normalisation_peptides* peptides);

        void dropPeptides();

        std::string getPeptidesSchemaType() const;


        bool haveProteins() const;

        const ms_quant_normalisation_proteins* getProteins() const;

        void setProteins(const ms_quant_normalisation_proteins* proteins);

        void dropProteins();

        std::string getProteinsSchemaType() const;

    private:

        std::string _method;
        bool _method_set;

        ms_quant_normalisation_peptides *_pPeptides;
        bool _peptides_set;

        ms_quant_normalisation_proteins *_pProteins;
        bool _proteins_set;
    }; // class ms_quant_normalisation
 // end of config_group

} // namespace matrix_science

#endif // MS_QUANT_NORMALISATION_HPP

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