ms_quant_normalisation_protein.hpp

/*
##############################################################################
# file: ms_quant_normalisation_protein.hpp                                   #
# 'msparser' toolkit                                                         #
# Encapsulates protein-element from "quantitation.xml"-file                  #
##############################################################################
# COPYRIGHT NOTICE                                                           #
# Copyright 1998-2009 Matrix Science Limited  All Rights Reserved.           #
#                                                                            #
##############################################################################
 * @(#)$Source: parser/inc/ms_quant_normalisation_protein.hpp $
 * @(#)$Revision: 1b450440f9c97e1e41d0fc6016a27d68951d4532 | MSPARSER_REL_2_8_1-0-gea32989045 $
 * @(#)$Date: 2018-07-30 16:23:53 +0100 $
##############################################################################
 */

#ifndef MS_QUANT_NORMALISATION_PROTEIN_HPP
#define MS_QUANT_NORMALISATION_PROTEIN_HPP


#include <string>
#include <vector>

// forward declarations
namespace msparser_internal {
    class ms_quant_xmlloader;
}

namespace matrix_science {

    class ms_quant_modgroup; // forward declaration
    class ms_xml_schema; // forward declaration



    class MS_MASCOTRESFILE_API ms_quant_normalisation_protein: public ms_xml_IValidatable
    {
        friend class msparser_internal::ms_quant_xmlloader;

    public:
        ms_quant_normalisation_protein();

        ms_quant_normalisation_protein(const ms_quant_normalisation_protein& src);

        virtual ~ms_quant_normalisation_protein();

        void defaultValues();

        void copyFrom(const ms_quant_normalisation_protein* right);

#ifndef SWIG

        ms_quant_normalisation_protein& operator=(const ms_quant_normalisation_protein& right);
#endif

        virtual std::string getSchemaType() const;

        virtual std::string validateShallow(const ms_xml_schema *pSchemaFileObj) const;

        virtual std::string validateDeep(const ms_xml_schema *pSchemaFileObj) const;


        bool haveAccession() const;

        std::string getAccession() const;

        void setAccession(const char * value);

        void dropAccession();

        std::string getAccessionSchemaType() const;

    private:

        std::string _accession;
        bool _accession_set;
    }; // class ms_quant_normalisation_protein

    class MS_MASCOTRESFILE_API ms_quant_normalisation_proteins: public ms_xml_IValidatable
    {
        friend class msparser_internal::ms_quant_xmlloader;

    public:
        ms_quant_normalisation_proteins();

        ms_quant_normalisation_proteins(const ms_quant_normalisation_proteins& src);

        virtual ~ms_quant_normalisation_proteins();

        void defaultValues();

        void copyFrom(const ms_quant_normalisation_proteins* right);

#ifndef SWIG

        ms_quant_normalisation_proteins& operator=(const ms_quant_normalisation_proteins& right);
#endif

        virtual std::string getSchemaType() const;

        virtual std::string validateShallow(const ms_xml_schema *pSchemaFileObj) const;

        virtual std::string validateDeep(const ms_xml_schema *pSchemaFileObj) const;


        int getNumberOfProteins() const;

        void clearProteins();

        void appendProtein(const ms_quant_normalisation_protein* protein);

        const ms_quant_normalisation_protein* getProtein(const int idx) const;

        bool updateProtein(const int idx, const ms_quant_normalisation_protein* protein);

        bool deleteProtein(const int idx);

        std::string getProteinSchemaType() const;

    private:

        typedef std::vector< ms_quant_normalisation_protein* > prot_vector;
        prot_vector _proteins;
    }; // class ms_quant_normalisation_proteins
 // end of config_group

} // namespace matrix_science

#endif // MS_QUANT_NORMALISATION_PROTEIN_HPP

/*------------------------------- End of File -------------------------------*/