ms_umod_aminoacid.hpp

/*
##############################################################################
# file: ms_umod_aminoacid.hpp                                                #
# 'msparser' toolkit                                                         #
# Represents 'amino acid' object from unimod.xml file                        #
##############################################################################
# COPYRIGHT NOTICE                                                           #
# Copyright 1998-2006 Matrix Science Limited  All Rights Reserved.           #
#                                                                            #
##############################################################################
 * @(#)$Source: parser/inc/ms_umod_aminoacid.hpp $
 * @(#)$Revision: 1b450440f9c97e1e41d0fc6016a27d68951d4532 | MSPARSER_REL_2_8_1-0-gea32989045 $
 * @(#)$Date: 2018-07-30 16:23:53 +0100 $
##############################################################################
 */

#ifndef MS_UMOD_AMINOACID_HPP
#define MS_UMOD_AMINOACID_HPP


#include <string>
#include <vector>

// forward declarations
namespace msparser_internal {
    class ms_umod_xmlloader;
}

namespace matrix_science {

    class ms_umod_elemref; // forward declaration
    class ms_xml_schema; // forward declaration


    class MS_MASCOTRESFILE_API ms_umod_aminoacid: public ms_xml_IValidatable
    {
        friend class msparser_internal::ms_umod_xmlloader;
        friend class ms_umod_configfile;

    public:
        ms_umod_aminoacid();

        ms_umod_aminoacid(const ms_umod_aminoacid& src);

        virtual ~ms_umod_aminoacid();

        void defaultValues();

        void copyFrom(const ms_umod_aminoacid* right);

#ifndef SWIG

        ms_umod_aminoacid& operator=(const ms_umod_aminoacid& right);
#endif

        virtual std::string getSchemaType() const;

        virtual std::string validateShallow(const ms_xml_schema *pSchemaFileObj) const;

        virtual std::string validateDeep(const ms_xml_schema *pSchemaFileObj) const;


        int getNumberOfElemRefs() const;

        void clearElemRefs();

        void appendElemRef(const ms_umod_elemref *elemref);

        const ms_umod_elemref* getElemRef(const int idx) const;

        bool updateElemRef(const int idx, const ms_umod_elemref *elemref);

        bool deleteElemRef(const int idx);

        std::string getElemRefSchemaType() const;


        bool haveTitle() const;

        std::string getTitle() const;

        void setTitle(const char* value);

        void dropTitle();

        std::string getTitleSchemaType() const;


        bool haveThreeLetter() const;

        std::string getThreeLetter() const;

        void setThreeLetter(const char* value);

        void dropThreeLetter();

        std::string getThreeLetterSchemaType() const;


        bool haveFullName() const;

        std::string getFullName() const;

        void setFullName(const char* value);

        void dropFullName();

        std::string getFullNameSchemaType() const;


        bool haveAvgeMass() const;

        double getAvgeMass() const;

        void setAvgeMass(const double value);

        void dropAvgeMass();

        std::string getAvgeMassSchemaType() const;


        bool haveMonoMass() const;

        double getMonoMass() const;

        void setMonoMass(const double value);

        void dropMonoMass();

        std::string getMonoMassSchemaType() const;

    private:

        typedef std::vector< ms_umod_elemref* > elemref_vector;
        elemref_vector _elemRefs;

        std::string _title;
        bool _title_set;

        std::string _threeLetter;
        bool _threeLetter_set;

        std::string _fullName;
        bool _fullName_set;

        double _avgeMass;
        bool _avgeMass_set;

        double _monoMass;
        bool _monoMass_set;
    }; // class ms_umod_aminoacid
 // end of config_group

} // namespace matrix_science

#endif // MS_UMOD_AMINOACID_HPP

/*------------------------------- End of File -------------------------------*/