Example program for retrieving general search information.
/* ############################################################################## # file: resfile_info.cs # # 'msparser' toolkit example code # ############################################################################## # COPYRIGHT NOTICE # # Copyright 1998-2015 Matrix Science Limited All Rights Reserved. # # # ############################################################################## # $Source: parser/examples/test_csharp/resfile_info.cs $ # # $Author: villek@matrixscience.com $ # # $Date: 2018-07-30 16:23:53 +0100 $ # # $Revision: 1b450440f9c97e1e41d0fc6016a27d68951d4532 | MSPARSER_REL_2_8_1-0-gea32989045 $ # # $NoKeywords:: $ # ############################################################################## */ using System; using matrix_science.msparser; namespace MsParserExamples { public class resfile_info { public static void Main(string[] argv) { // ----- Object creation ----- if (argv.Length < 1) { Console.WriteLine("Must specify results filename as parameter"); return; } ms_mascotresfile file = new ms_mascotresfile(argv[0], 0, ""); if (file.isValid()) { searchInformation(file); } else { Console.WriteLine("Error number: {0}", file.getLastError()); Console.WriteLine("Error string: {0}", file.getLastErrorString()); return; } } private static void searchInformation(ms_mascotresfile file) { DateTime searchDate; // C# DateTime struct int seconds = file.getDate(); // get date of search in seconds since midnight GMT Jan 1st 1970 long milliseconds = (long) seconds * 1000; // convert to milliseconds searchDate = (new DateTime(1970, 1, 1)).AddMilliseconds(milliseconds); // create the DateTime struct. .NET DateTime // are intialised to 1/1/0001, so we need to reset to // 1/1/1970 Console.WriteLine("Search information from ms_mascotresfile"); Console.WriteLine("========================================"); Console.WriteLine("Number of queries : {0}", file.getNumQueries()); Console.WriteLine("Number of hits : {0}", file.getNumHits()); Console.WriteLine("Number of sequences : {0}", file.getNumSeqs()); Console.WriteLine("Sequences after tax : {0}", file.getNumSeqsAfterTax()); Console.WriteLine("Number of residues : {0}", (int) file.getNumResidues()); Console.WriteLine("Execution time : {0}", file.getExecTime()); Console.WriteLine("Date (seconds) : {0}", file.getDate()); Console.WriteLine("Date : {0}", searchDate.ToString("ddd MMM dd hh:mm:ss yyyy")); // Change output format to match Perl Console.WriteLine("Mascot version : {0}", file.getMascotVer()); Console.WriteLine("Fasta version : {0}", file.getFastaVer()); // make C# output identical to perl output Console.WriteLine("Is PMF? : {0}", toBinary(file.isPMF())); Console.WriteLine("Is MSMS? : {0}", toBinary(file.isMSMS())); Console.WriteLine("Is SQ? : {0}", toBinary(file.isSQ())); Console.WriteLine("Is Error tolerant : {0}", toBinary(file.isErrorTolerant())); Console.WriteLine("Any PMF? : {0}", toBinary(file.anyPMF())); Console.WriteLine("Any MSMS? : {0}", toBinary(file.anyMSMS())); Console.WriteLine("Any SQ? : {0}", toBinary(file.anySQ())); // C++ enum converted to C# enum, so we need to use the enum name when referencing the // required section constant Console.WriteLine("Any peptides section : {0}", toBinary(file.doesSectionExist(ms_mascotresfile.section.SEC_PEPTIDES))); Console.WriteLine("Any peptide matches : {0}", toBinary(file.anyPeptideSummaryMatches())); Console.WriteLine(); } public static int toBinary(bool b) { return (b) ? 1 : 0; } } } /* resfile_info.exe c:\inetpub\mascot\data\F981118.dat Will give the following output: Search information from ms_mascotresfile ======================================== Number of queries : 6 Number of hits : 50 Number of sequences : 257964 Sequences after tax : 15720 Number of residues : 93947433 Execution time : 8 Date (seconds) : 1171893592 Date : Mon Feb 19 01:59:52 2007 Mascot version : 2.1.119 Fasta version : SwissProt_51.6.fasta Is PMF? : 1 Is MSMS? : 0 Is SQ? : 0 Is Error tolerant : 0 Any PMF? : 1 Any MSMS? : 0 Any SQ? : 0 Any peptides section : 0 Any peptide matches : 0 */
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