XML Schema Documentation

Target Namespace	http://www.matrixscience.com/xmlns/schema/mascot_search_results_2
Element and Attribute Namespaces	Global element and attribute declarations belong to this schema's target namespace. By default, local element declarations belong to this schema's target namespace. By default, local attribute declarations have no namespace.

Prefix	Namespace
xml	http://www.w3.org/XML/1998/namespace
xs	http://www.w3.org/2001/XMLSchema
msr	http://www.matrixscience.com/xmlns/schema/mascot_search_results_2

Name	mascot_search_results
Type	Locally-defined complex type
Nillable	no
Abstract	no
Documentation	Structured information parsed from a single Mascot search result file

XML Instance Representation

<msr:mascot_search_results
majorVersion="2 [1]"
minorVersion=" msr:minorVersion_t [1]">

<msr:header> [0..1] ?

<msr:COM> xs:string </msr:COM> [1] ?

<msr:Date> xs:dateTime </msr:Date> [1] ?

<msr:USERNAME> xs:string </msr:USERNAME> [1] ?

<msr:USEREMAIL> xs:string </msr:USEREMAIL> [1] ?

<msr:URI> xs:anyURI </msr:URI> [1] ?

<msr:FILENAME> xs:string </msr:FILENAME> [1] ?

<msr:FORMAT> xs:string </msr:FORMAT> [1] ?

<msr:SEARCH> xs:string </msr:SEARCH> [1] ?

<msr:MascotVer> xs:string </msr:MascotVer> [1] ?

<msr:DB> xs:string </msr:DB> [1] ?

<msr:FastaVer> xs:string </msr:FastaVer> [1] ?

<msr:NumSeqs> xs:long </msr:NumSeqs> [1] ?

<msr:NumResidues> xs:long </msr:NumResidues> [1] ?

<msr:NumSeqsAfterTax> xs:long </msr:NumSeqsAfterTax> [1] ?

<msr:error_tolerant_num> xs:long (value >= 1) </msr:error_tolerant_num> [0..1] ?

<msr:NumQueries> xs:long (value >= 1) </msr:NumQueries> [1] ?

<msr:warning
number=" xs:integer [1]"> [0..*] ?
xs:string
</msr:warning>

</msr:header>

<msr:decoy> [0..1] ?

<msr:NumHitsAboveIdentity> xs:long </msr:NumHitsAboveIdentity> [0..1] ?

<msr:NumDecoyHitsAboveIdentity> xs:long </msr:NumDecoyHitsAboveIdentity> [0..1] ?

<msr:NumHitsAboveHomology> xs:long </msr:NumHitsAboveHomology> [0..1] ?

<msr:NumDecoyHitsAboveHomology> xs:long </msr:NumDecoyHitsAboveHomology> [0..1] ?

<msr:HighestScoreProtein> xs:double </msr:HighestScoreProtein> [0..1] ?

<msr:HighestScoreDecoyProtein> xs:double </msr:HighestScoreDecoyProtein> [0..1] ?

</msr:decoy>

<msr:variable_mods> [0..1] ?

<msr:modification
identifier=" xs:string [1]"> [0..*]

<msr:name> xs:string </msr:name> [1] ?

<msr:delta> xs:double </msr:delta> [1] ?

<msr:neutral_loss
identifier=" xs:string [1]"> [0..*] ?
xs:double
</msr:neutral_loss>

</msr:modification>

</msr:variable_mods>

<msr:search_parameters> [0..1] ?

<msr:TAXONOMY> xs:string </msr:TAXONOMY> [1] ?

<msr:CLE> xs:string </msr:CLE> [1] ?

<msr:PFA> xs:integer (0 <= value <= 9) </msr:PFA> [1] ?

<msr:MODS> xs:string </msr:MODS> [1] ?

<msr:ICAT> xs:boolean </msr:ICAT> [0..1] ?

<msr:QUANTITATION> xs:string </msr:QUANTITATION> [0..1] ?

<msr:IT_MODS> xs:string </msr:IT_MODS> [1] ?

<msr:TOL> xs:double </msr:TOL> [1] ?

<msr:TOLU> xs:string (value comes from list: {'Da'|'ppm'|'%'|'mmu'}) </msr:TOLU> [1] ?

<msr:CHARGE> xs:string </msr:CHARGE> [0..1] ?

<msr:ITOL> xs:double </msr:ITOL> [0..1] ?

<msr:ITOLU> xs:string (value comes from list: {'Da'|'mmu'}) </msr:ITOLU> [0..1] ?

<msr:MASS> xs:string </msr:MASS> [1] ?

<msr:SEG> xs:double </msr:SEG> [0..1] ?

<msr:INSTRUMENT> xs:string </msr:INSTRUMENT> [0..1] ?

<msr:PEP_ISOTOPE_ERROR> xs:integer </msr:PEP_ISOTOPE_ERROR> [0..1] ?

<msr:DECOY> xs:boolean </msr:DECOY> [0..1] ?

<msr:user_parameter
name=" xs:string [1]"> [0..*] ?
xs:string
</msr:user_parameter>

</msr:search_parameters>

<msr:format_parameters> [0..1] ?

<msr:sigthreshold> xs:double (0 <= value <= 1) </msr:sigthreshold> [1] ?

<msr:REPORT> xs:long </msr:REPORT> [1] ?

<msr:mudpit> xs:boolean </msr:mudpit> [0..1] ?

<msr:ignoreionsscorebelow> xs:double (value >= 0) </msr:ignoreionsscorebelow> [0..1] ?

<msr:show_same_sets> xs:boolean </msr:show_same_sets> [1] ?

<msr:showsubsets> xs:double </msr:showsubsets> [1] ?

<msr:show_unassigned> xs:boolean </msr:show_unassigned> [0..1] ?

<msr:requireboldred> xs:boolean </msr:requireboldred> [0..1] ?

<msr:UNIGENE> xs:string </msr:UNIGENE> [0..1] ?

</msr:format_parameters>

<msr:masses> [0..1]

<msr:mass
name=" xs:string [1]"> [26..*] ?
xs:double
</msr:mass>

</msr:masses>

<msr:hits> [0..1] ?

<msr:hit
number=" xs:long [1]"> [0..*] ?

<msr:protein
accession=" xs:string [1]"> [1..*] ?

<msr:prot_desc> xs:string </msr:prot_desc> [0..1] ?

<msr:prot_score> xs:double (value >= 0) </msr:prot_score> [0..1] ?

<msr:prot_thresh> xs:double (value >= 0) </msr:prot_thresh> [0..1] ?

<msr:prot_expect> xs:double (value >= 0) </msr:prot_expect> [0..1] ?

<msr:prot_mass> xs:double (value >= 0) </msr:prot_mass> [0..1] ?

<msr:prot_matches> xs:long (value >= 1) </msr:prot_matches> [0..1] ?

<msr:prot_cover> xs:double (value >= 0) </msr:prot_cover> [0..1] ?

<msr:prot_len> xs:long (value >= 1) </msr:prot_len> [0..1] ?

<msr:prot_pi> xs:double (value >= 0) </msr:prot_pi> [0..1] ?

<msr:prot_tax_str> xs:string </msr:prot_tax_str> [0..1] ?

<msr:prot_tax_id> xs:long </msr:prot_tax_id> [0..1] ?

<msr:prot_seq> xs:string </msr:prot_seq> [0..1] ?

<msr:peptide> msr:peptideType </msr:peptide> [0..*]

<msr:prot_empai> xs:double </msr:prot_empai> [0..1] ?

<msr:quant_prot_ratio
name=" xs:string [1]"
ratio=" xs:string [0..1]"
n=" xs:string [0..1]"
sd=" xs:string [0..1]"
significant=" xs:string [0..1]"/> [0..*] ?

</msr:protein>

</msr:hit>

</msr:hits>

<msr:unassigned> [0..1] ?

<msr:u_peptide> msr:peptideType </msr:u_peptide> [0..*]

</msr:unassigned>

<msr:queries> [0..1] ?

<msr:query
number=" xs:long [1]"> [1..*]

<msr:query_moverz> xs:double </msr:query_moverz> [1] ?

<msr:query_charge> xs:string </msr:query_charge> [1] ?

<msr:query_intensity> xs:double </msr:query_intensity> [0..1] ?

<msr:StringTitle> xs:string </msr:StringTitle> [0..1] ?

<msr:SCANS> xs:string </msr:SCANS> [0..1] ?

<msr:RTINSECONDS> xs:string </msr:RTINSECONDS> [0..1] ?

<msr:qual_tol> xs:string </msr:qual_tol> [0..1] ?

<msr:qual_seq
number=" xs:integer [1]"> [0..20] ?
xs:string
</msr:qual_seq>

<msr:qual_comp
number=" xs:integer [1]"> [0..20] ?
xs:string
</msr:qual_comp>

<msr:qual_tag
number=" xs:integer [1]"> [0..20] ?
xs:string
</msr:qual_tag>

<msr:query_TOL> xs:double </msr:query_TOL> [0..1] ?

<msr:query_TOLU> xs:string (value comes from list: {'Da'|'ppm'|'%'|'mmu'}) </msr:query_TOLU> [0..1] ?

<msr:query_IT_MODS> xs:string </msr:query_IT_MODS> [0..1] ?

<msr:query_INSTRUMENT> xs:string </msr:query_INSTRUMENT> [0..1] ?

<msr:TotalIonsIntensity> xs:double </msr:TotalIonsIntensity> [0..1] ?

<msr:NumVals> xs:long </msr:NumVals> [0..1] ?

<msr:StringIons1> xs:string </msr:StringIons1> [0..1] ?

<msr:StringIons2> xs:string </msr:StringIons2> [0..1] ?

<msr:StringIons3> xs:string </msr:StringIons3> [0..1] ?

<msr:q_peptide> msr:peptideType </msr:q_peptide> [0..*]

</msr:query>

</msr:queries>

</msr:mascot_search_results>

Schema Component Representation

<xs:element name="mascot_search_results">

<xs:complexType>

<xs:sequence>

<xs:element name="header" minOccurs="0">

<xs:complexType>

<xs:sequence>

<xs:element name="COM" type=" xs:string "/>

<xs:element name="Date" type=" xs:dateTime "/>

<xs:element name="USERNAME" type=" xs:string "/>

<xs:element name="USEREMAIL" type=" xs:string "/>

<xs:element name="URI" type=" xs:anyURI "/>

<xs:element name="FILENAME" type=" xs:string "/>

<xs:element name="FORMAT" type=" xs:string "/>

<xs:element name="SEARCH" type=" xs:string "/>

<xs:element name="MascotVer" type=" xs:string "/>

<xs:element name="DB" type=" xs:string "/>

<xs:element name="FastaVer" type=" xs:string "/>

<xs:element name="NumSeqs" type=" xs:long "/>

<xs:element name="NumResidues" type=" xs:long "/>

<xs:element name="NumSeqsAfterTax" type=" xs:long "/>

<xs:element name="error_tolerant_num" minOccurs="0">

<xs:simpleType>

<xs:restriction base=" xs:long ">

<xs:minInclusive value="1"/>

</xs:restriction>

</xs:simpleType>

</xs:element>

<xs:element name="NumQueries">

<xs:simpleType>

<xs:restriction base=" xs:long ">

<xs:minInclusive value="1"/>

</xs:restriction>

</xs:simpleType>

</xs:element>

<xs:element name="warning" minOccurs="0" maxOccurs="unbounded">

<xs:complexType>

<xs:simpleContent>

<xs:extension base=" xs:string ">

<xs:attribute name="number" type=" xs:integer " use="required"/>

</xs:extension>

</xs:simpleContent>

</xs:complexType>

</xs:element>

</xs:sequence>

</xs:complexType>

</xs:element>

<xs:element name="decoy" minOccurs="0">

<xs:complexType>

<xs:sequence>

<xs:element name="NumHitsAboveIdentity" type=" xs:long " minOccurs="0"/>

<xs:element name="NumDecoyHitsAboveIdentity" type=" xs:long " minOccurs="0"/>

<xs:element name="NumHitsAboveHomology" type=" xs:long " minOccurs="0"/>

<xs:element name="NumDecoyHitsAboveHomology" type=" xs:long " minOccurs="0"/>

<xs:element name="HighestScoreProtein" type=" xs:double " minOccurs="0"/>

<xs:element name="HighestScoreDecoyProtein" type=" xs:double " minOccurs="0"/>

</xs:sequence>

</xs:complexType>

</xs:element>

<xs:element name="variable_mods" minOccurs="0">

<xs:complexType>

<xs:sequence>

<xs:element name="modification" minOccurs="0" maxOccurs="unbounded">

<xs:complexType>

<xs:sequence>

<xs:element name="name" type=" xs:string "/>

<xs:element name="delta" type=" xs:double "/>

<xs:element name="neutral_loss" minOccurs="0" maxOccurs="unbounded">

<xs:complexType>

<xs:simpleContent>

<xs:extension base=" xs:double ">

<xs:attribute name="identifier" type=" xs:string " use="required"/>

</xs:extension>

</xs:simpleContent>

</xs:complexType>

</xs:element>

</xs:sequence>

<xs:attribute name="identifier" type=" xs:string " use="required"/>

</xs:complexType>

</xs:element>

</xs:sequence>

</xs:complexType>

</xs:element>

<xs:element name="search_parameters" minOccurs="0">

<xs:complexType>

<xs:sequence>

<xs:element name="TAXONOMY" type=" xs:string "/>

<xs:element name="CLE" type=" xs:string "/>

<xs:element name="PFA">

<xs:simpleType>

<xs:restriction base=" xs:integer ">

<xs:minInclusive value="0"/>

<xs:maxInclusive value="9"/>

</xs:restriction>

</xs:simpleType>

</xs:element>

<xs:element name="MODS" type=" xs:string "/>

<xs:element name="ICAT" type=" xs:boolean " minOccurs="0"/>

<xs:element name="QUANTITATION" type=" xs:string " minOccurs="0"/>

<xs:element name="IT_MODS" type=" xs:string "/>

<xs:element name="TOL" type=" xs:double "/>

<xs:element name="TOLU">

<xs:simpleType>

<xs:restriction base=" xs:string ">

<xs:enumeration value="Da"/>

<xs:enumeration value="ppm"/>

<xs:enumeration value="%"/>

<xs:enumeration value="mmu"/>

</xs:restriction>

</xs:simpleType>

</xs:element>

<xs:element name="CHARGE" type=" xs:string " minOccurs="0"/>

<xs:element name="ITOL" type=" xs:double " minOccurs="0"/>

<xs:element name="ITOLU" minOccurs="0">

<xs:simpleType>

<xs:restriction base=" xs:string ">

<xs:enumeration value="Da"/>

<xs:enumeration value="mmu"/>

</xs:restriction>

</xs:simpleType>

</xs:element>

<xs:element name="MASS" type=" xs:string "/>

<xs:element name="SEG" type=" xs:double " minOccurs="0"/>

<xs:element name="INSTRUMENT" type=" xs:string " minOccurs="0"/>

<xs:element name="PEP_ISOTOPE_ERROR" type=" xs:integer " minOccurs="0"/>

<xs:element name="DECOY" type=" xs:boolean " minOccurs="0"/>

<xs:element name="user_parameter" minOccurs="

XML Schema Documentation

Table of Contents

Schema Document Properties

Declared Namespaces

Global Declarations

Element: mascot_search_results