XML Schema Documentation

Table of Contents

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Schema Document Properties

Target Namespace http://regis-web.systemsbiology.net/pepXML
Element and Attribute Namespaces
  • Global element and attribute declarations belong to this schema's target namespace.
  • By default, local element declarations belong to this schema's target namespace.
  • By default, local attribute declarations have no namespace.
Documentation MS/MS pipeline analysis schema. Developed by ISB proteome center.

Declared Namespaces

Prefix Namespace
Default namespace http://regis-web.systemsbiology.net/pepXML
xml http://www.w3.org/XML/1998/namespace
xs http://www.w3.org/2001/XMLSchema
pepx http://regis-web.systemsbiology.net/pepXML
Schema Component Representation
<xs:schema targetNamespace="http://regis-web.systemsbiology.net/pepXML" elementFormDefault="qualified">
...
</xs:schema>
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Global Declarations

Element: asapratio_contribution

Name asapratio_contribution
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<asapratio_contribution
ratio=" xs:float [1]"
error=" xs:float [1]"
charge=" xs:nonNegativeInteger [1]"
use=" xs:unsignedByte [1]">
<asapratio_lc_lightpeak> ... </asapratio_lc_lightpeak> [1]
<asapratio_lc_heavypeak> ... </asapratio_lc_heavypeak> [1]
</asapratio_contribution>
Schema Component Representation
<xs:element name="asapratio_contribution">
<xs:complexType>
<xs:sequence>
<xs:element ref=" asapratio_lc_lightpeak "/>
<xs:element ref=" asapratio_lc_heavypeak "/>
</xs:sequence>
<xs:attribute name="ratio" type=" xs:float " use="required"/>
<xs:attribute name="error" type=" xs:float " use="required"/>
<xs:attribute name="charge" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="use" type=" xs:unsignedByte " use="required"/>
</xs:complexType>
</xs:element>
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Element: asapratio_lc_heavypeak

Name asapratio_lc_heavypeak
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<asapratio_lc_heavypeak
status=" xs:byte [1]"
left_valley=" xs:int [1]"
right_valley=" xs:int [1]"
background=" xs:float [1]"
area=" xs:float [1]"
area_error=" xs:float [1]"
time=" xs:float [1]"
time_width=" xs:float [1]"
is_heavy=" xs:string [1]"/>
Schema Component Representation
<xs:element name="asapratio_lc_heavypeak">
<xs:complexType>
<xs:attribute name="status" type=" xs:byte " use="required"/>
<xs:attribute name="left_valley" type=" xs:int " use="required"/>
<xs:attribute name="right_valley" type=" xs:int " use="required"/>
<xs:attribute name="background" type=" xs:float " use="required"/>
<xs:attribute name="area" type=" xs:float " use="required"/>
<xs:attribute name="area_error" type=" xs:float " use="required"/>
<xs:attribute name="time" type=" xs:float " use="required"/>
<xs:attribute name="time_width" type=" xs:float " use="required"/>
<xs:attribute name="is_heavy" type=" xs:string " use="required"/>
</xs:complexType>
</xs:element>
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Element: asapratio_lc_lightpeak

Name asapratio_lc_lightpeak
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<asapratio_lc_lightpeak
status=" xs:byte [1]"
left_valley=" xs:int [1]"
right_valley=" xs:int [1]"
background=" xs:float [1]"
area=" xs:float [1]"
area_error=" xs:float [1]"
time=" xs:float [1]"
time_width=" xs:float [1]"
is_heavy=" xs:string [1]"/>
Schema Component Representation
<xs:element name="asapratio_lc_lightpeak">
<xs:complexType>
<xs:attribute name="status" type=" xs:byte " use="required"/>
<xs:attribute name="left_valley" type=" xs:int " use="required"/>
<xs:attribute name="right_valley" type=" xs:int " use="required"/>
<xs:attribute name="background" type=" xs:float " use="required"/>
<xs:attribute name="area" type=" xs:float " use="required"/>
<xs:attribute name="area_error" type=" xs:float " use="required"/>
<xs:attribute name="time" type=" xs:float " use="required"/>
<xs:attribute name="time_width" type=" xs:float " use="required"/>
<xs:attribute name="is_heavy" type=" xs:string " use="required"/>
</xs:complexType>
</xs:element>
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Element: asapratio_peptide_data

Name asapratio_peptide_data
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<asapratio_peptide_data
status=" xs:byte [1]"
cidIndex=" xs:int [1]"
light_mass=" xs:float [1]"
heavy_mass=" xs:float [1]"
area_flag=" xs:unsignedInt [1]">
<asapratio_contribution> ... </asapratio_contribution> [1..*]
</asapratio_peptide_data>
Schema Component Representation
<xs:element name="asapratio_peptide_data">
<xs:complexType>
<xs:sequence>
<xs:element ref=" asapratio_contribution " maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="status" type=" xs:byte " use="required"/>
<xs:attribute name="cidIndex" type=" xs:int " use="required"/>
<xs:attribute name="light_mass" type=" xs:float " use="required"/>
<xs:attribute name="heavy_mass" type=" xs:float " use="required"/>
<xs:attribute name="area_flag" type=" xs:unsignedInt " use="required"/>
</xs:complexType>
</xs:element>
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Element: asapratio_result

Name asapratio_result
Type Locally-defined complex type
Nillable no
Abstract no
Documentation Quantitation
XML Instance Representation
<asapratio_result
mean=" xs:float [1]"
error=" xs:float [1]"
heavy2light_mean=" xs:float [1]"
heavy2light_error=" xs:float [1]">
<asapratio_peptide_data> ... </asapratio_peptide_data> [1]
</asapratio_result>
Schema Component Representation
<xs:element name="asapratio_result">
<xs:complexType>
<xs:sequence>
<xs:element ref=" asapratio_peptide_data "/>
</xs:sequence>
<xs:attribute name="mean" type=" xs:float " use="required"/>
<xs:attribute name="error" type=" xs:float " use="required"/>
<xs:attribute name="heavy2light_mean" type=" xs:float " use="required"/>
<xs:attribute name="heavy2light_error" type=" xs:float " use="required"/>
</xs:complexType>
</xs:element>
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Element: asapratio_summary

Name asapratio_summary
Type Locally-defined complex type
Nillable no
Abstract no
Documentation Quantitation
XML Instance Representation
<asapratio_summary
version=" xs:string [1]"
author=" xs:string [1]"
elution=" xs:integer [1] ?"
labeled_residues=" xs:string [1] ?"
area_flag=" xs:nonNegativeInteger [1]"
static_quant=" xs:string [1] ?"/>
Schema Component Representation
<xs:element name="asapratio_summary">
<xs:complexType>
<xs:attribute name="version" type=" xs:string " use="required"/>
<xs:attribute name="author" type=" xs:string " use="required"/>
<xs:attribute name="elution" type=" xs:integer " use="required"/>
<xs:attribute name="labeled_residues" type=" xs:string " use="required"/>
<xs:attribute name="area_flag" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="static_quant" type=" xs:string " use="required"/>
</xs:complexType>
</xs:element>
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Element: asapratio_timestamp

Name asapratio_timestamp
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<asapratio_timestamp
quant_label_masses=" xs:string [0..1]"
static_quant_label=" xs:string [0..1]"/>
Schema Component Representation
<xs:element name="asapratio_timestamp">
<xs:complexType>
<xs:attribute name="quant_label_masses" type=" xs:string "/>
<xs:attribute name="static_quant_label" type=" xs:string "/>
<-- <xs:attribute name="light_labels" type="xs:string"/> <xs:attribute name="heavy_labels" type="xs:string"/> -->
</xs:complexType>
</xs:element>
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Element: database_refresh_timestamp

Name database_refresh_timestamp
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<database_refresh_timestamp
database=" xs:string [1]"
min_num_enz_term=" xs:nonNegativeInteger [0..1]"/>
Schema Component Representation
<xs:element name="database_refresh_timestamp">
<xs:complexType>
<xs:attribute name="database" type=" xs:string " use="required"/>
<xs:attribute name="min_num_enz_term" type=" xs:nonNegativeInteger "/>
</xs:complexType>
</xs:element>
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Element: interact_summary

Name interact_summary
Type Locally-defined complex type
Nillable no
Abstract no
Documentation Combined datasets
XML Instance Representation
<interact_summary
filename=" xs:string [1]"
directory=" xs:string [1]"
inputfiles=" xs:string [1]"/>
Schema Component Representation
<xs:element name="interact_summary">
<xs:complexType>
<xs:attribute name="filename" type=" xs:string " use="required"/>
<xs:attribute name="directory" type=" xs:string " use="required"/>
<xs:attribute name="inputfiles" type=" xs:string " use="required"/>
</xs:complexType>
</xs:element>
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Element: libra_result

Name libra_result
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<libra_result>
<!--
Uniqueness Constraint - libra_result_channel_index
Selector - .
Field(s) - @channel
-->

<intensity
channel=" positiveInt [1]"
target_mass=" xs:float [1]"
absolute=" xs:float [1]"
normalized=" xs:float [1]"/> [1..*]
</libra_result>
Schema Component Representation
<xs:element name="libra_result">
<xs:complexType>
<xs:sequence>
<xs:element name="intensity" maxOccurs="unbounded">
<-- the following are vector<float> -->
<xs:complexType>
<xs:attribute name="channel" type=" positiveInt " use="required"/>
<xs:attribute name="target_mass" type=" xs:float " use="required"/>
<xs:attribute name="absolute" type=" xs:float " use="required"/>
<xs:attribute name="normalized" type=" xs:float " use="required"/>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
<xs:unique name="libra_result_channel_index">
<xs:selector xpath="."/>
<xs:field xpath="@channel"/>
</xs:unique>
</xs:element>
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Element: libra_summary

Name libra_summary
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<libra_summary
mass_tolerance=" xs:float [1]"
centroiding_preference=" xs:int [1]"
normalization=" xs:int [1]"
output_type=" xs:int [1]"
channel_code=" xs:string [0..1]">
<!--
Key Constraint - libra_channel_index
Selector - ./pepx:fragment_masses
Field(s) - @channel
-->
<!--
Key Reference Constraint - libra_contr_channel_index_ref
Selector - ./pepx:isotopic_contributions/pepx:contributing_channel
Field(s) - @channel
Refers to - libra_channel_index
-->
<!--
Key Reference Constraint - libra_aff_channel_index_ref
Selector - ./pepx:isotopic_contributions/pepx:contributing_channel/pepx:affected_channel
Field(s) - @channel
Refers to - libra_channel_index
-->

<fragment_masses
channel=" positiveInt [1]"
mz=" xs:float [1]"/> [1..*]
<isotopic_contributions> [0..1]
<contributing_channel
channel=" positiveInt [1]"> [1..*]
<affected_channel
channel=" positiveInt [1]"
correction=" xs:float [1]"/> [1..*]
</contributing_channel>
</isotopic_contributions>
</libra_summary>
Schema Component Representation
<xs:element name="libra_summary">
<xs:complexType>
<xs:sequence>
<xs:element name="fragment_masses" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="channel" type=" positiveInt " use="required"/>
<xs:attribute name="mz" type=" xs:float " use="required"/>
</xs:complexType>
</xs:element>
<xs:element name="isotopic_contributions" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element name="contributing_channel" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="affected_channel" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="channel" type=" positiveInt " use="required"/>
<xs:attribute name="correction" type=" xs:float " use="required"/>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="channel" type=" positiveInt " use="required"/>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="mass_tolerance" type=" xs:float " use="required"/>
<xs:attribute name="centroiding_preference" type=" xs:int " use="required"/>
<xs:attribute name="normalization" type=" xs:int " use="required"/>
<xs:attribute name="output_type" type=" xs:int " use="required"/>
<xs:attribute name="channel_code" type=" xs:string "/>
</xs:complexType>
<xs:key name="libra_channel_index">
<xs:selector xpath="./pepx:fragment_masses"/>
<xs:field xpath="@channel"/>
</xs:key>
<xs:keyref name="libra_contr_channel_index_ref" refer=" libra_channel_index ">
<xs:selector xpath="./pepx:isotopic_contributions/pepx:contributing_channel"/>
<xs:field xpath="@channel"/>
</xs:keyref>
<xs:keyref name="libra_aff_channel_index_ref" refer=" libra_channel_index ">
<xs:selector xpath="./pepx:isotopic_contributions/pepx:contributing_channel/pepx:affected_channel"/>
<xs:field xpath="@channel"/>
</xs:keyref>
</xs:element>
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Element: msms_pipeline_analysis

Name msms_pipeline_analysis
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<msms_pipeline_analysis
name=" xs:string [0..1] ?"
date=" xs:dateTime [1] ?"
summary_xml=" xs:string [1] ?">
<!--
Key Constraint - summary_analysis_time
Selector - ./pepx:analysis_summary
Field(s) - @time, @analysis
-->
<!--
Key Reference Constraint - timestamp_analysis_time
Selector - ./pepx:msms_run_summary/pepx:analysis_timestamp
Field(s) - @time, @analysis
Refers to - summary_analysis_time
-->
<!--
Uniqueness Constraint - unique_search_summary_basename
Selector - ./pepx:msms_run_summary/pepx:search_summary
Field(s) - @base_name
-->

<analysis_summary
time=" xs:dateTime [1] ?"
analysis=" xs:string [1] ?"
version=" xs:string [0..1] ?"> [0..*] ?
Allow any elements from any namespace (lax validation). [0..1]
</analysis_summary>
<dataset_derivation
generation_no=" xs:nonNegativeInteger [1]"> [0..1] ?
<data_filter
number=" xs:nonNegativeInteger [1]"
parent_file=" xs:string [1]"
windows_parent=" xs:string [0..1]"
description=" xs:string [1] ?"/> [0..*]
</dataset_derivation>
<msms_run_summary
base_name=" xs:string [1] ?"
raw_data_type=" xs:string [1] ?"
raw_data=" xs:string [1] ?"
msManufacturer=" xs:string [0..1] ?"
msModel=" xs:string [0..1] ?"
msIonization=" xs:string [0..1] ?"
msMassAnalyzer=" xs:string [0..1] ?"
msDetector=" xs:string [0..1] ?"> [1..*] ?
<!--
Uniqueness Constraint - unique_timestamp_analysis_time
Selector - ./pepx:analysis_timestamp
Field(s) - @analysis, @time
-->
<!--
Key Constraint - search_summary_id
Selector - ./pepx:search_summary
Field(s) - @search_id
-->
<!--
Key Reference Constraint - search_result_id
Selector - ./pepx:spectrum_query/pepx:search_result
Field(s) - @search_id
Refers to - search_summary_id
-->
<!--
Key Constraint - timestamp_analysis_id
Selector - ./pepx:analysis_timestamp
Field(s) - @analysis, @id
-->
<!--
Key Reference Constraint - result_analysis_id
Selector - ./pepx:spectrum_query/pepx:search_result/pepx:search_hit/pepx:analysis_result
Field(s) - @analysis, @id
Refers to - timestamp_analysis_id
-->

<sample_enzyme
name=" xs:string (length >= 1) [1] ?"
description=" xs:string [0..1] ?"
fidelity=" xs:string (value comes from list: {'specific'|'semispecific'|'nonspecific'}) [0..1] ?"
independent=" xs:boolean [0..1] ?"> [1] ?
<specificity
sense=" xs:string (value comes from list: {'C'|'N'}) [1] ?"
min_spacing=" xs:nonNegativeInteger [0..1] ?"
cut=" xs:string (pattern = [A,C-I,K-N,P-T,VWY]+) (length >= 1) [1] ?"
no_cut=" xs:string (length >= 0) [0..1] ?"/> [0..*] ?
</sample_enzyme>
<search_summary
base_name=" xs:string [1] ?"
search_engine=" engineType [1] ?"
precursor_mass_type=" massType [1] ?"
fragment_mass_type=" massType [1] ?"
out_data_type=" xs:string [1] ?"
out_data=" xs:string [1] ?"
search_id=" positiveInt [1] ?"> [1..*] ?
<search_database
local_path=" xs:string [1] ?"
URL=" xs:string [0..1]"
database_name=" xs:string [0..1]"
orig_database_url=" xs:string [0..1]"
database_release_date=" xs:dateTime [0..1]"
database_release_identifier=" xs:string [0..1]"
size_in_db_entries=" xs:nonNegativeInteger [0..1]"
size_of_residues=" xs:nonNegativeInteger [0..1]"
type=" xs:string (value comes from list: {'AA'|'NA'}) [1] ?"/> [0..1]
<enzymatic_search_constraint
enzyme=" xs:string [1]"
max_num_internal_cleavages=" xs:nonNegativeInteger [1] ?"
min_number_termini=" xs:nonNegativeInteger [1] ?"/> [0..1] ?
<sequence_search_constraint
sequence=" xs:string [1] ?"/> [0..*] ?
<aminoacid_modification
aminoacid=" xs:string [1]"
massdiff=" xs:string [1] ?"
mass=" xs:float [1] ?"
variable=" xs:string [1] ?"
peptide_terminus=" xs:string [0..1] ?"
symbol=" aa_symbolType [0..1] ?"
binary=" xs:string [0..1] ?"
description=" xs:string [0..1]"/> [0..*] ?
<terminal_modification
terminus=" xs:string [1] ?"
massdiff=" xs:string [1] ?"
mass=" xs:float [1] ?"
variable=" xs:string [1] ?"
symbol=" term_symbolType [0..1] ?"
protein_terminus=" xs:string [1] ?"
description=" xs:string [0..1]"/> [0..*] ?
<parameter> nameValueType </parameter> [0..*]
</search_summary>
<analysis_timestamp
time=" xs:dateTime [1] ?"
analysis=" xs:string [1] ?"
id=" positiveInt [1] ?"> [0..*] ?
Allow any elements from any namespace (lax validation). [0..1]
</analysis_timestamp>
<spectrum_query
spectrum=" xs:string [1]"
start_scan=" xs:unsignedInt [1] ?"
end_scan=" xs:unsignedInt [1] ?"
precursor_neutral_mass=" xs:float [1]"
assumed_charge=" xs:nonNegativeInteger [1] ?"
search_specification=" xs:string [0..1] ?"
index=" positiveInt [1] ?"> [0..*] ?
<!--
Uniqueness Constraint - unique_search_id
Selector - ./pepx:search_result
Field(s) - @search_id
-->

<search_result
search_id=" positiveInt [0..1] ?"> [0..*]
<search_hit
hit_rank=" positiveInt [1]"
peptide=" xs:string [1] ?"
peptide_prev_aa=" xs:string [0..1] ?"
peptide_next_aa=" xs:string [0..1] ?"
protein=" xs:string [1]"
num_tot_proteins=" xs:unsignedInt [1] ?"
num_matched_ions=" xs:nonNegativeInteger [0..1] ?"
tot_num_ions=" xs:nonNegativeInteger [0..1] ?"
calc_neutral_pep_mass=" xs:float [1]"
massdiff=" xs:string [1] ?"
num_tol_term=" xs:nonNegativeInteger [0..1] ?"
num_missed_cleavages=" xs:integer [0..1] ?"
is_rejected=" xs:nonNegativeInteger (value comes from list: {'0'|'1'}) [0..1] ?"
protein_descr=" xs:string [0..1] ?"
calc_pI=" xs:string [0..1]"
protein_mw=" xs:double [0..1]"> [0..*] ?
<!--
Uniqueness Constraint - unique_result_analysis_id
Selector - ./pepx:analysis_result
Field(s) - @analysis, @id
-->

<alternative_protein
protein=" xs:string [1]"
protein_descr=" xs:string [0..1]"
num_tol_term=" xs:nonNegativeInteger [0..1]"
protein_mw=" xs:double [0..1]"/> [0..*] ?
<modification_info
mod_nterm_mass=" xs:double [0..1] ?"
mod_cterm_mass=" xs:double [0..1] ?"
modified_peptide=" xs:string [0..1] ?"> [0..1] ?
<mod_aminoacid_mass
position=" xs:nonNegativeInteger [1] ?"
mass=" xs:double [1] ?"/> [0..*]
</modification_info>
<search_score> nameValueType </search_score> [0..*]
<analysis_result
analysis=" xs:string [1]"
id=" positiveInt [0..1]"> [0..*]
Allow any elements from any namespace (lax validation). [1]
</analysis_result>
<parameter> nameValueType </parameter> [0..*]
</search_hit>
</search_result>
</spectrum_query>
</msms_run_summary>
</msms_pipeline_analysis>
Schema Component Representation
<xs:element name="msms_pipeline_analysis">
<xs:complexType>
<xs:sequence>
<xs:element name="analysis_summary" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:any namespace="##any" processContents="lax" minOccurs="0"/>
</xs:sequence>
<xs:attribute name="time" type=" xs:dateTime " use="required"/>
<xs:attribute name="analysis" type=" xs:string " use="required"/>
<xs:attribute name="version" type=" xs:string "/>
</xs:complexType>
</xs:element>
<xs:element name="dataset_derivation" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element name="data_filter" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="number" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="parent_file" type=" xs:string " use="required"/>
<xs:attribute name="windows_parent" type=" xs:string "/>
<xs:attribute name="description" type=" xs:string " use="required"/>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="generation_no" type=" xs:nonNegativeInteger " use="required"/>
</xs:complexType>
</xs:element>
<xs:element name="msms_run_summary" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="sample_enzyme">
<xs:complexType>
<xs:sequence>
<xs:element name="specificity" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="sense" use="required">
<xs:simpleType>
<xs:restriction base=" xs:string ">
<xs:enumeration value="C"/>
<xs:enumeration value="N"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
<xs:attribute name="min_spacing" type=" xs:nonNegativeInteger " default="1"/>
<xs:attribute name="cut" use="required">
<xs:simpleType>
<xs:restriction base=" xs:string ">
<xs:minLength value="1"/>
<xs:maxLength value="20"/>
<xs:pattern value="[A,C-I,K-N,P-T,VWY]+"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
<xs:attribute name="no_cut" use="optional">
<xs:simpleType>
<xs:restriction base=" xs:string ">
<xs:minLength value="0"/>
<xs:maxLength value="20"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="name" use="required">
<xs:simpleType>
<xs:restriction base=" xs:string ">
<xs:minLength value="1"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
<xs:attribute name="description" type=" xs:string " use="optional"/>
<xs:attribute name="fidelity" use="optional" default="specific">
<xs:simpleType>
<xs:restriction base=" xs:string ">
<xs:enumeration value="specific"/>
<xs:enumeration value="semispecific"/>
<xs:enumeration value="nonspecific"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
<xs:attribute name="independent" type=" xs:boolean " use="optional" default="1"/>
</xs:complexType>
</xs:element>
<xs:element name="search_summary" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="search_database" minOccurs="0">
<xs:complexType>
<xs:attribute name="local_path" type=" xs:string " use="required"/>
<xs:attribute name="URL" type=" xs:string "/>
<xs:attribute name="database_name" type=" xs:string "/>
<xs:attribute name="orig_database_url" type=" xs:string "/>
<xs:attribute name="database_release_date" type=" xs:dateTime "/>
<xs:attribute name="database_release_identifier" type=" xs:string "/>
<xs:attribute name="size_in_db_entries" type=" xs:nonNegativeInteger "/>
<xs:attribute name="size_of_residues" type=" xs:nonNegativeInteger "/>
<xs:attribute name="type" use="required">
<xs:simpleType>
<xs:restriction base=" xs:string ">
<xs:enumeration value="AA"/>
<xs:enumeration value="NA"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
</xs:complexType>
</xs:element>
<xs:element name="enzymatic_search_constraint" minOccurs="0">
<xs:complexType>
<xs:attribute name="enzyme" type=" xs:string " use="required"/>
<xs:attribute name="max_num_internal_cleavages" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="min_number_termini" type=" xs:nonNegativeInteger " use="required"/>
</xs:complexType>
</xs:element>
<xs:element name="sequence_search_constraint" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="sequence" type=" xs:string " use="required"/>
</xs:complexType>
</xs:element>
<xs:element name="aminoacid_modification" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="aminoacid" type=" xs:string " use="required"/>
<xs:attribute name="massdiff" type=" xs:string " use="required"/>
<xs:attribute name="mass" type=" xs:float " use="required"/>
<xs:attribute name="variable" type=" xs:string " use="required"/>
<xs:attribute name="peptide_terminus" type=" xs:string "/>
<xs:attribute name="symbol" type=" aa_symbolType "/>
<xs:attribute name="binary" type=" xs:string "/>
<xs:attribute name="description" type=" xs:string "/>
</xs:complexType>
</xs:element>
<xs:element name="terminal_modification" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="terminus" type=" xs:string " use="required"/>
<xs:attribute name="massdiff" type=" xs:string " use="required"/>
<xs:attribute name="mass" type=" xs:float " use="required"/>
<xs:attribute name="variable" type=" xs:string " use="required"/>
<xs:attribute name="symbol" type=" term_symbolType "/>
<xs:attribute name="protein_terminus" type=" xs:string " use="required"/>
<xs:attribute name="description" type=" xs:string "/>
</xs:complexType>
</xs:element>
<xs:element name="parameter" type=" nameValueType " minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="base_name" type=" xs:string " use="required"/>
<xs:attribute name="search_engine" type=" engineType " use="required"/>
<xs:attribute name="precursor_mass_type" type=" massType " use="required"/>
<xs:attribute name="fragment_mass_type" type=" massType " use="required"/>
<xs:attribute name="out_data_type" type=" xs:string " use="required"/>
<xs:attribute name="out_data" type=" xs:string " use="required"/>
<xs:attribute name="search_id" type=" positiveInt " use="required"/>
</xs:complexType>
</xs:element>
<xs:element name="analysis_timestamp" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:any namespace="##any" processContents="lax" minOccurs="0"/>
</xs:sequence>
<xs:attribute name="time" type=" xs:dateTime " use="required"/>
<xs:attribute name="analysis" type=" xs:string " use="required"/>
<xs:attribute name="id" type=" positiveInt " use="required"/>
</xs:complexType>
</xs:element>
<xs:element name="spectrum_query" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="search_result" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="search_hit" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="alternative_protein" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="protein" type=" xs:string " use="required"/>
<xs:attribute name="protein_descr" type=" xs:string "/>
<xs:attribute name="num_tol_term" type=" xs:nonNegativeInteger "/>
<xs:attribute name="protein_mw" type=" xs:double "/>
</xs:complexType>
</xs:element>
<xs:element name="modification_info" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element name="mod_aminoacid_mass" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="position" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="mass" type=" xs:double " use="required"/>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="mod_nterm_mass" type=" xs:double "/>
<xs:attribute name="mod_cterm_mass" type=" xs:double "/>
<xs:attribute name="modified_peptide" type=" xs:string "/>
</xs:complexType>
</xs:element>
<xs:element name="search_score" type=" nameValueType " minOccurs="0" maxOccurs="unbounded"/>
<xs:element name="analysis_result" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:any namespace="##any" processContents="lax"/>
</xs:sequence>
<xs:attribute name="analysis" type=" xs:string " use="required"/>
<xs:attribute name="id" type=" positiveInt " default="1"/>
</xs:complexType>
</xs:element>
<xs:element name="parameter" type=" nameValueType " minOccurs="0" maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="hit_rank" type=" positiveInt " use="required"/>
<xs:attribute name="peptide" type=" xs:string " use="required"/>
<xs:attribute name="peptide_prev_aa" type=" xs:string "/>
<xs:attribute name="peptide_next_aa" type=" xs:string "/>
<xs:attribute name="protein" type=" xs:string " use="required"/>
<xs:attribute name="num_tot_proteins" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="num_matched_ions" type=" xs:nonNegativeInteger "/>
<xs:attribute name="tot_num_ions" type=" xs:nonNegativeInteger "/>
<xs:attribute name="calc_neutral_pep_mass" type=" xs:float " use="required"/>
<xs:attribute name="massdiff" type=" xs:string " use="required"/>
<xs:attribute name="num_tol_term" type=" xs:nonNegativeInteger "/>
<xs:attribute name="num_missed_cleavages" type=" xs:integer "/>
<xs:attribute name="is_rejected" default="0">
<xs:simpleType>
<xs:restriction base=" xs:nonNegativeInteger ">
<xs:enumeration value="0"/>
<xs:enumeration value="1"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
<xs:attribute name="protein_descr" type=" xs:string "/>
<xs:attribute name="calc_pI" type=" xs:string "/>
<xs:attribute name="protein_mw" type=" xs:double "/>
</xs:complexType>
<xs:unique name="unique_result_analysis_id">
<xs:selector xpath="./pepx:analysis_result"/>
<xs:field xpath="@analysis"/>
<xs:field xpath="@id"/>
</xs:unique>
</xs:element>
</xs:sequence>
<xs:attribute name="search_id" type=" positiveInt " default="1"/>
</xs:complexType>
</xs:element>
<-- search result -->
</xs:sequence>
<xs:attribute name="spectrum" type=" xs:string " use="required"/>
<xs:attribute name="start_scan" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="end_scan" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="precursor_neutral_mass" type=" xs:float " use="required"/>
<xs:attribute name="assumed_charge" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="search_specification" type=" xs:string "/>
<xs:attribute name="index" type=" positiveInt " use="required"/>
</xs:complexType>
<xs:unique name="unique_search_id">
<xs:selector xpath="./pepx:search_result"/>
<xs:field xpath="@search_id"/>
</xs:unique>
</xs:element>
<-- <xs:element name="msInstrument" minOccurs="0"> <xs:annotation> <xs:documentation>General information about the MS instrument. (cf. mzXML msInstrument)</xs:documentation> </xs:annotation> <xs:complexType> <xs:sequence> <xs:element name="msManufacturer"> <xs:complexType> <xs:complexContent> <xs:extension base="ontologyEntryType"/> </xs:complexContent> </xs:complexType> </xs:element> <xs:element name="msModel" type="ontologyEntryType"/> <xs:element name="msIonisation" type="ontologyEntryType"/> <xs:element name="msMassAnalyzer"> <xs:complexType> <xs:complexContent> <xs:extension base="ontologyEntryType"/> </xs:complexContent> </xs:complexType> </xs:element> </xs:sequence> </xs:complexType> </xs:element> -->
</xs:sequence>
<xs:attribute name="base_name" type=" xs:string " use="required"/>
<-- <xs:attribute name="search_engine" type="engineType" use="required"> <xs:annotation> <xs:documentation>SEQUEST, Mascot, COMET, etc</xs:documentation> </xs:annotation> </xs:attribute> -->
<xs:attribute name="raw_data_type" type=" xs:string " use="required"/>
<xs:attribute name="raw_data" type=" xs:string " use="required"/>
<-- <xs:attribute name="out_data_type" type="xs:string" use="required"> <xs:annotation> <xs:documentation>Format of file storing the runner up peptides (if not present in pepXML)</xs:documentation> </xs:annotation> </xs:attribute> <xs:attribute name="out_data" type="xs:string" use="required"> <xs:annotation> <xs:documentation>runner up search hit data type extension (e.g. .tgz)</xs:documentation> </xs:annotation> </xs:attribute> -->
<xs:attribute name="msManufacturer" type=" xs:string "/>
<xs:attribute name="msModel" type=" xs:string "/>
<xs:attribute name="msIonization" type=" xs:string "/>
<xs:attribute name="msMassAnalyzer" type=" xs:string "/>
<xs:attribute name="msDetector" type=" xs:string "/>
</xs:complexType>
<xs:unique name="unique_timestamp_analysis_time">
<xs:selector xpath="./pepx:analysis_timestamp"/>
<xs:field xpath="@analysis"/>
<xs:field xpath="@time"/>
</xs:unique>
<xs:key name="search_summary_id">
<xs:selector xpath="./pepx:search_summary"/>
<xs:field xpath="@search_id"/>
</xs:key>
<xs:keyref name="search_result_id" refer=" search_summary_id ">
<xs:selector xpath="./pepx:spectrum_query/pepx:search_result"/>
<xs:field xpath="@search_id"/>
</xs:keyref>
<xs:key name="timestamp_analysis_id">
<xs:selector xpath="./pepx:analysis_timestamp"/>
<xs:field xpath="@analysis"/>
<xs:field xpath="@id"/>
</xs:key>
<xs:keyref name="result_analysis_id" refer=" timestamp_analysis_id ">
<xs:selector xpath="./pepx:spectrum_query/pepx:search_result/pepx:search_hit/pepx:analysis_result"/>
<xs:field xpath="@analysis"/>
<xs:field xpath="@id"/>
</xs:keyref>
</xs:element>
</xs:sequence>
<xs:attribute name="name" type=" xs:string "/>
<xs:attribute name="date" type=" xs:dateTime " use="required"/>
<xs:attribute name="summary_xml" type=" xs:string " use="required"/>
</xs:complexType>
<xs:key name="summary_analysis_time">
<xs:selector xpath="./pepx:analysis_summary"/>
<xs:field xpath="@time"/>
<xs:field xpath="@analysis"/>
</xs:key>
<xs:keyref name="timestamp_analysis_time" refer=" summary_analysis_time ">
<xs:selector xpath="./pepx:msms_run_summary/pepx:analysis_timestamp"/>
<xs:field xpath="@time"/>
<xs:field xpath="@analysis"/>
</xs:keyref>
<xs:unique name="unique_search_summary_basename">
<xs:selector xpath="./pepx:msms_run_summary/pepx:search_summary"/>
<xs:field xpath="@base_name"/>
</xs:unique>
</xs:element>
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Element: peptideprophet_result

Name peptideprophet_result
Type Locally-defined complex type
Nillable no
Abstract no
Documentation Validation
XML Instance Representation
<peptideprophet_result
probability=" xs:float [1]"
all_ntt_prob=" xs:string [0..1]"
analysis=" xs:string [0..1]">
<search_score_summary> [0..1]
<parameter> nameValueType </parameter> [2..*]
</search_score_summary>
</peptideprophet_result>
Schema Component Representation
<xs:element name="peptideprophet_result">
<xs:complexType>
<xs:sequence>
<xs:element name="search_score_summary" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element name="parameter" type=" nameValueType " minOccurs="2" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="probability" type=" xs:float " use="required"/>
<xs:attribute name="all_ntt_prob" type=" xs:string "/>
<xs:attribute name="analysis" type=" xs:string "/>
</xs:complexType>
</xs:element>
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Element: peptideprophet_summary

Name peptideprophet_summary
Type Locally-defined complex type
Nillable no
Abstract no
Documentation Validation of search results
XML Instance Representation
<peptideprophet_summary
version=" xs:string [1]"
author=" xs:string [1]"
inputfiles=" xs:string [1]"
min_prob=" xs:float [1] ?"
options=" xs:string [0..1] ?"
est_tot_num_correct=" xs:float [0..1] ?">
<roc_data_point
min_prob=" xs:float [1] ?"
sensitivity=" xs:float [1] ?"
error=" xs:float [1] ?"
num_corr=" xs:unsignedInt [1] ?"
num_incorr=" xs:unsignedInt [1] ?"/> [0..*]
<error_point
error=" xs:float [1] ?"
min_prob=" xs:float [1] ?"
num_corr=" xs:unsignedInt [1] ?"
num_incorr=" xs:unsignedInt [1] ?"/> [0..*]
<distribution_point
fvalue=" xs:float [1] ?"
obs_1_distr=" xs:nonNegativeInteger [1] ?"
model_1_pos_distr=" xs:float [1] ?"
model_1_neg_distr=" xs:float [1] ?"
obs_2_distr=" xs:nonNegativeInteger [1] ?"
model_2_pos_distr=" xs:float [1] ?"
model_2_neg_distr=" xs:float [1] ?"
obs_3_distr=" xs:nonNegativeInteger [1] ?"
model_3_pos_distr=" xs:float [1] ?"
model_3_neg_distr=" xs:float [1] ?"/> [0..*]
<mixture_model
precursor_ion_charge=" xs:nonNegativeInteger [1]"
comments=" xs:string [1]"
prior_probability=" xs:float [1] ?"
est_tot_correct=" xs:float [1]"
tot_num_spectra=" xs:nonNegativeInteger [1] ?"
num_iterations=" xs:nonNegativeInteger [1] ?"> [0..*]
<mixturemodel_distribution
name=" xs:string [1]"> [1..*]
<posmodel_distribution
type=" model_dis_type [0..1]"> [1]
<parameter> nameValueType </parameter> [1..*]
</posmodel_distribution>
<negmodel_distribution
type=" model_dis_type [0..1]"> [1]
<parameter> nameValueType </parameter> [1..*]
</negmodel_distribution>
</mixturemodel_distribution>
</mixture_model>
</peptideprophet_summary>
Schema Component Representation
<xs:element name="peptideprophet_summary">
<xs:complexType>
<xs:sequence>
<xs:element name="roc_data_point" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="min_prob" type=" xs:float " use="required"/>
<xs:attribute name="sensitivity" type=" xs:float " use="required"/>
<xs:attribute name="error" type=" xs:float " use="required"/>
<xs:attribute name="num_corr" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="num_incorr" type=" xs:unsignedInt " use="required"/>
</xs:complexType>
</xs:element>
<xs:element name="error_point" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="error" type=" xs:float " use="required"/>
<xs:attribute name="min_prob" type=" xs:float " use="required"/>
<xs:attribute name="num_corr" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="num_incorr" type=" xs:unsignedInt " use="required"/>
</xs:complexType>
</xs:element>
<xs:element name="distribution_point" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:attribute name="fvalue" type=" xs:float " use="required"/>
<xs:attribute name="obs_1_distr" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="model_1_pos_distr" type=" xs:float " use="required"/>
<xs:attribute name="model_1_neg_distr" type=" xs:float " use="required"/>
<xs:attribute name="obs_2_distr" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="model_2_pos_distr" type=" xs:float " use="required"/>
<xs:attribute name="model_2_neg_distr" type=" xs:float " use="required"/>
<xs:attribute name="obs_3_distr" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="model_3_pos_distr" type=" xs:float " use="required"/>
<xs:attribute name="model_3_neg_distr" type=" xs:float " use="required"/>
</xs:complexType>
</xs:element>
<xs:element name="mixture_model" minOccurs="0" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="mixturemodel_distribution" maxOccurs="unbounded">
<xs:complexType>
<xs:sequence>
<xs:element name="posmodel_distribution">
<xs:complexType>
<xs:sequence>
<xs:element name="parameter" type=" nameValueType " maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="type" type=" model_dis_type "/>
</xs:complexType>
</xs:element>
<xs:element name="negmodel_distribution">
<xs:complexType>
<xs:sequence>
<xs:element name="parameter" type=" nameValueType " maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="type" type=" model_dis_type "/>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="name" type=" xs:string " use="required"/>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="precursor_ion_charge" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="comments" type=" xs:string " use="required"/>
<xs:attribute name="prior_probability" type=" xs:float " use="required"/>
<xs:attribute name="est_tot_correct" type=" xs:float " use="required"/>
<xs:attribute name="tot_num_spectra" type=" xs:nonNegativeInteger " use="required"/>
<xs:attribute name="num_iterations" type=" xs:nonNegativeInteger " use="required"/>
</xs:complexType>
</xs:element>
</xs:sequence>
<xs:attribute name="version" type=" xs:string " use="required"/>
<xs:attribute name="author" type=" xs:string " use="required"/>
<xs:attribute name="inputfiles" type=" xs:string " use="required"/>
<xs:attribute name="min_prob" type=" xs:float " use="required"/>
<xs:attribute name="options" type=" xs:string "/>
<xs:attribute name="est_tot_num_correct" type=" xs:float "/>
</xs:complexType>
</xs:element>
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Element: xpressratio_result

Name xpressratio_result
Type Locally-defined complex type
Nillable no
Abstract no
Documentation Quantitation
XML Instance Representation
<xpressratio_result
light_firstscan=" xs:unsignedInt [1]"
light_lastscan=" xs:unsignedInt [1]"
light_mass=" xs:float [1]"
heavy_firstscan=" xs:unsignedInt [1]"
heavy_lastscan=" xs:unsignedInt [1]"
heavy_mass=" xs:float [1]"
mass_tol=" xs:float [1]"
ratio=" xs:string [1]"
heavy2light_ratio=" xs:string [1]"
light_area=" xs:float [1]"
heavy_area=" xs:float [1]"
decimal_ratio=" xs:decimal [1]"/>
Schema Component Representation
<xs:element name="xpressratio_result">
<xs:complexType>
<xs:attribute name="light_firstscan" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="light_lastscan" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="light_mass" type=" xs:float " use="required"/>
<xs:attribute name="heavy_firstscan" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="heavy_lastscan" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="heavy_mass" type=" xs:float " use="required"/>
<xs:attribute name="mass_tol" type=" xs:float " use="required"/>
<xs:attribute name="ratio" type=" xs:string " use="required"/>
<xs:attribute name="heavy2light_ratio" type=" xs:string " use="required"/>
<xs:attribute name="light_area" type=" xs:float " use="required"/>
<xs:attribute name="heavy_area" type=" xs:float " use="required"/>
<xs:attribute name="decimal_ratio" type=" xs:decimal " use="required"/>
</xs:complexType>
</xs:element>
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Element: xpressratio_summary

Name xpressratio_summary
Type Locally-defined complex type
Nillable no
Abstract no
Documentation Quantitation
XML Instance Representation
<xpressratio_summary
version=" xs:string [1]"
author=" xs:string [1]"
same_scan_range=" xs:string [1]"
labeled_residues=" xs:string [1]"
xpress_light=" xs:unsignedInt [1]"
massdiff=" xs:string [1]"
masstol=" xs:float [1]"/>
Schema Component Representation
<xs:element name="xpressratio_summary">
<xs:complexType>
<xs:attribute name="version" type=" xs:string " use="required"/>
<xs:attribute name="author" type=" xs:string " use="required"/>
<xs:attribute name="same_scan_range" type=" xs:string " use="required"/>
<xs:attribute name="labeled_residues" type=" xs:string " use="required"/>
<xs:attribute name="xpress_light" type=" xs:unsignedInt " use="required"/>
<xs:attribute name="massdiff" type=" xs:string " use="required"/>
<xs:attribute name="masstol" type=" xs:float " use="required"/>
</xs:complexType>
</xs:element>
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Element: xpressratio_timestamp

Name xpressratio_timestamp
Type Locally-defined complex type
Nillable no
Abstract no
XML Instance Representation
<xpressratio_timestamp
xpress_light=" xs:integer [1]"/>
Schema Component Representation
<xs:element name="xpressratio_timestamp">
<xs:complexType>
<xs:attribute name="xpress_light" type=" xs:integer " use="required"/>
</xs:complexType>
</xs:element>
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Global Definitions

Complex Type: nameValueType

Super-types: xs:anySimpleType < nameValueType (by extension)
Sub-types: None
Name nameValueType
Abstract no
XML Instance Representation
<...
name=" xs:string [1]"
value=" xs:anySimpleType [1]"
type=" xs:anySimpleType [0..1]">
xs:anySimpleType
</...>
Schema Component Representation
<xs:complexType name="nameValueType">
<xs:simpleContent>
<xs:extension base=" xs:anySimpleType ">
<xs:attribute name="name" type=" xs:string " use="required"/>
<xs:attribute name="value" type=" xs:anySimpleType " use="required"/>
<xs:attribute name="type" type=" xs:anySimpleType "/>
</xs:extension>
</xs:simpleContent>
</xs:complexType>
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Simple Type: aa_symbolType

Super-types: xs:string < aa_symbolType (by restriction)
Sub-types: None
Name aa_symbolType
Content
  • Base XSD Type: string
  • value comes from list: {'1'|'2'|'3'|'4'|'5'|'6'|'7'|'8'|'9'|'#'|'@'|'*'|'~'|'''|''''|'$'|'!'|'^'|'?'}
Schema Component Representation
<xs:simpleType name="aa_symbolType">
<xs:restriction base=" xs:string ">
<xs:enumeration value="1"/>
<xs:enumeration value="2"/>
<xs:enumeration value="3"/>
<xs:enumeration value="4"/>
<xs:enumeration value="5"/>
<xs:enumeration value="6"/>
<xs:enumeration value="7"/>
<xs:enumeration value="8"/>
<xs:enumeration value="9"/>
<xs:enumeration value="#"/>
<xs:enumeration value="@"/>
<xs:enumeration value="*"/>
<xs:enumeration value="~"/>
<xs:enumeration value="'"/>
<xs:enumeration value="''"/>
<xs:enumeration value="$"/>
<xs:enumeration value="!"/>
<xs:enumeration value="^"/>
<xs:enumeration value="?"/>
</xs:restriction>
</xs:simpleType>
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Simple Type: engineType

Super-types: xs:string < engineType (by restriction)
Sub-types: None
Name engineType
Content
  • Base XSD Type: string
  • value comes from list: {'SEQUEST'|'MASCOT'|'COMET'|'PROBID'}
Schema Component Representation
<xs:simpleType name="engineType">
<xs:restriction base=" xs:string ">
<xs:enumeration value="SEQUEST"/>
<xs:enumeration value="MASCOT"/>
<xs:enumeration value="COMET"/>
<xs:enumeration value="PROBID"/>
</xs:restriction>
</xs:simpleType>
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Simple Type: massType

Super-types: xs:string < massType (by restriction)
Sub-types: None
Name massType
Content
  • Base XSD Type: string
  • value comes from list: {'monoisotopic'|'average'}
Schema Component Representation
<xs:simpleType name="massType">
<xs:restriction base=" xs:string ">
<xs:enumeration value="monoisotopic"/>
<xs:enumeration value="average"/>
</xs:restriction>
</xs:simpleType>
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Simple Type: model_dis_type

Super-types: xs:string < model_dis_type (by restriction)
Sub-types: None
Name model_dis_type
Content
  • Base XSD Type: string
  • value comes from list: {'discrete'|'gaussian'|'extremevalue'|'gamma'|'evd'}
Schema Component Representation
<xs:simpleType name="model_dis_type">
<xs:restriction base=" xs:string ">
<xs:enumeration value="discrete"/>
<xs:enumeration value="gaussian"/>
<xs:enumeration value="extremevalue"/>
<xs:enumeration value="gamma"/>
<xs:enumeration value="evd"/>
</xs:restriction>
</xs:simpleType>
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Simple Type: positiveInt

Super-types: xs:unsignedInt < positiveInt (by restriction)
Sub-types: None
Name positiveInt
Content
  • Base XSD Type: unsignedInt
  • value >= 1
Schema Component Representation
<xs:simpleType name="positiveInt">
<xs:restriction base=" xs:unsignedInt ">
<xs:minInclusive value="1"/>
</xs:restriction>
</xs:simpleType>
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Simple Type: term_symbolType

Super-types: xs:string < term_symbolType (by restriction)
Sub-types: None
Name term_symbolType
Content
  • Base XSD Type: string
  • value comes from list: {','|';'|':'}
Schema Component Representation
<xs:simpleType name="term_symbolType">
<xs:restriction base=" xs:string ">
<xs:enumeration value=","/>
<xs:enumeration value=";"/>
<xs:enumeration value=":"/>
</xs:restriction>
</xs:simpleType>
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Legend

Complex Type:

Schema Component Type

AusAddress

Schema Component Name
Super-types: Address < AusAddress (by extension)
Sub-types:
  • QLDAddress (by restriction)
If this schema component is a type definition, its type hierarchy is shown in a gray-bordered box.
Name AusAddress
Abstract no
The table above displays the properties of this schema component.
XML Instance Representation
<... country="Australia" >
<unitNo> string </unitNo> [0..1]
<houseNo> string </houseNo> [1]
<street> string </street> [1]
Start Choice [1]
<city> string </city> [1]
<town> string </town> [1]
End Choice
<state> AusStates </state> [1]
<postcode> string <<pattern = [1-9][0-9]{3}>> </postcode> [1] ?
</...>

The XML Instance Representation table above shows the schema component's content as an XML instance.

Schema Component Representation
<complexType name="AusAddress">
<complexContent>
<extension base=" Address ">
<sequence>
<element name="state" type=" AusStates "/>
<element name="postcode">
<simpleType>
<restriction base=" string ">
<pattern value="[1-9][0-9]{3}"/>
</restriction>
</simpleType>
</element>
</sequence>
<attribute name="country" type=" string " fixed="Australia"/>
</extension>
</complexContent>
</complexType>
The Schema Component Representation table above displays the underlying XML representation of the schema component. (Annotations are not shown.)
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Glossary

Abstract (Applies to complex type definitions and element declarations). An abstract element or complex type cannot used to validate an element instance. If there is a reference to an abstract element, only element declarations that can substitute the abstract element can be used to validate the instance. For references to abstract type definitions, only derived types can be used.

All Model Group Child elements can be provided in any order in instances. See: http://www.w3.org/TR/xmlschema-1/#element-all.

Choice Model Group Only one from the list of child elements and model groups can be provided in instances. See: http://www.w3.org/TR/xmlschema-1/#element-choice.

Collapse Whitespace Policy Replace tab, line feed, and carriage return characters with space character (Unicode character 32). Then, collapse contiguous sequences of space characters into single space character, and remove leading and trailing space characters.

Disallowed Substitutions (Applies to element declarations). If substitution is specified, then substitution group members cannot be used in place of the given element declaration to validate element instances. If derivation methods, e.g. extension, restriction, are specified, then the given element declaration will not validate element instances that have types derived from the element declaration's type using the specified derivation methods. Normally, element instances can override their declaration's type by specifying an xsi:type attribute.

Key Constraint Like Uniqueness Constraint, but additionally requires that the specified value(s) must be provided. See: http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions.

Key Reference Constraint Ensures that the specified value(s) must match value(s) from a Key Constraint or Uniqueness Constraint. See: http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions.

Model Group Groups together element content, specifying the order in which the element content can occur and the number of times the group of element content may be repeated. See: http://www.w3.org/TR/xmlschema-1/#Model_Groups.

Nillable (Applies to element declarations). If an element declaration is nillable, instances can use the xsi:nil attribute. The xsi:nil attribute is the boolean attribute, nil, from the http://www.w3.org/2001/XMLSchema-instance namespace. If an element instance has an xsi:nil attribute set to true, it can be left empty, even though its element declaration may have required content.

Notation A notation is used to identify the format of a piece of data. Values of elements and attributes that are of type, NOTATION, must come from the names of declared notations. See: http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations.

Preserve Whitespace Policy Preserve whitespaces exactly as they appear in instances.

Prohibited Derivations (Applies to type definitions). Derivation methods that cannot be used to create sub-types from a given type definition.

Prohibited Substitutions (Applies to complex type definitions). Prevents sub-types that have been derived using the specified derivation methods from validating element instances in place of the given type definition.

Replace Whitespace Policy Replace tab, line feed, and carriage return characters with space character (Unicode character 32).

Sequence Model Group Child elements and model groups must be provided in the specified order in instances. See: http://www.w3.org/TR/xmlschema-1/#element-sequence.

Substitution Group Elements that are members of a substitution group can be used wherever the head element of the substitution group is referenced.

Substitution Group Exclusions (Applies to element declarations). Prohibits element declarations from nominating themselves as being able to substitute a given element declaration, if they have types that are derived from the original element's type using the specified derivation methods.

Target Namespace The target namespace identifies the namespace that components in this schema belongs to. If no target namespace is provided, then the schema components do not belong to any namespace.

Uniqueness Constraint Ensures uniqueness of an element/attribute value, or a combination of values, within a specified scope. See: http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions.

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