ms_quant_isotope Class Reference [Mascot configuration files module]

Represents an isotope element. More...

#include <ms_quant_isotope.hpp>

List of all members.

Public Member Functions
	ms_quant_isotope ()
	Default constructor.
	ms_quant_isotope (const ms_quant_isotope &src)
	Copying constructor.
virtual	~ms_quant_isotope ()
	Destructor.
void	copyFrom (const ms_quant_isotope *right)
	Copies all content from another instance.
void	defaultValues ()
	Call this member if you want to start again.
void	dropNew ()
	Delete the new element.
void	dropOld ()
	Delete the old element.
std::string	getNew () const
	Returns the value of the new element.
std::string	getNewSchemaType () const
	Obtain a symbolic name for the new element schema type.
std::string	getOld () const
	Returns the value of the old element.
std::string	getOldSchemaType () const
	Obtain a symbolic name for the old element schema type.
virtual std::string	getSchemaType () const
	Returns name of the schema type that can be used to validate this element.
bool	haveNew () const
	Indicates presence of the new element.
bool	haveOld () const
	Indicates presence of the old element.
ms_quant_isotope &	operator= (const ms_quant_isotope &right)
	C++ style assignment operator.
void	setNew (const char *value)
	Set a custom value for the new element.
void	setOld (const char *value)
	Set a custom value for the old element.
virtual std::string	validateDeep (const ms_xml_schema *pSchemaFileObj) const
	Performs validation of all child elements in addition to 'shallow' validation.
virtual std::string	validateShallow (const ms_xml_schema *pSchemaFileObj) const
	Performs simple validation of the top-level elements only.

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Detailed Description

Represents an isotope element.

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Constructor & Destructor Documentation

ms_quant_isotope

(

)

Default constructor.

Assigns reasonable default values to all internal members.

ms_quant_isotope

(

const ms_quant_isotope &

src )

Copying constructor.

Parameters:

src	another instance of this class to copy the content from.

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Member Function Documentation

void copyFrom

(

const ms_quant_isotope *

right )

Copies all content from another instance.

Parameters:

right

another instance of this class to copy the content from.

void defaultValues

(

)

Call this member if you want to start again.

All internal values are reset to their defaults, as if the object had been freshly created with the default constructor.

void dropNew

(

)

Delete the new element.

Deletes the element until is re-set.

void dropOld

(

)

Delete the old element.

Deletes the element until is re-set.

std::string getNew

(

)

const

Returns the value of the new element.

The new element represents isotope label.

Returns:

a particular isotope to use instead of a standard element.

std::string getNewSchemaType

(

)

const

Obtain a symbolic name for the new element schema type.

The obtained type name can be used to get a corresponding type description object from ms_xml_schema.

Returns:

symbolic type name for the element.

std::string getOld

(

)

const

Returns the value of the old element.

The old element specifies isotope to be replaced, usually the most abundant natural isotope of the element.

Returns:

for example, "N".

std::string getOldSchemaType

(

)

const

Obtain a symbolic name for the old element schema type.

The obtained type name can be used to get a corresponding type description object from ms_xml_schema.

Returns:

symbolic type name for the element.

std::string getSchemaType

(

)

const [virtual]

Returns name of the schema type that can be used to validate this element.

Additional information about the current object can be retrieved from the associated XML schema file. Every element in an XML document is defined with a named type, which you can use to find out what kind of limits (numerical or otherwise) are defined for values of that type.

See also:

validateShallow(), validateDeep()

Returns:

a symbolic fully qualified type name (for example, "mqm:nameType").

bool haveNew

(

)

const

Indicates presence of the new element.

Returns:

TRUE if the element is present and FALSE otherwise.

bool haveOld

(

)

const

Indicates presence of the old element.

Returns:

TRUE if the element is present and FALSE otherwise.

ms_quant_isotope & operator=

(

const ms_quant_isotope &

right )

C++ style assignment operator.

Parameters:

right

another instance of this class to copy the content from.

Returns:

reference to the current object

void setNew

(

const char *

value )

Set a custom value for the new element.

Parameters:

value

a new value for the element.

void setOld

(

const char *

value )

Set a custom value for the old element.

Parameters:

value

a new value for the element.

std::string validateDeep

(

const ms_xml_schema *

pSchemaFileObj )

const [virtual]

Performs validation of all child elements in addition to 'shallow' validation.

The current object can be checked against an XML schema. When using this method all possible checks are performed. However, this is not a substitute for the schema: some schema-defined constraint are not applied (unique fields, foreign keys etc.).

In order to make sure that current object is free from all syntax errors validate it as a part of the whole document.

See also:

validateShallow(), getSchemaType()

Parameters:

pSchemaFileObj

a valid schema object instance to validate against.

Returns:

user-friendly description of any errors found during validation or an empty string if no errors detected.

std::string validateShallow

(

const ms_xml_schema *

pSchemaFileObj )

const [virtual]

Performs simple validation of the top-level elements only.

The current object can be checked against some basic constraints in a schema without looking at children element types. When using this method only the current object and children derived from standard types (for example, restrictions with enumerations) are checked. For more thorough validation, use validateDeep().

See also:

getSchemaType()

Parameters:

pSchemaFileObj

a valid schema object instance to validate against.

Returns:

user-friendly description of any errors found during validation or an empty string if no errors detected.

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The documentation for this class was generated from the following files:

• ms_quant_isotope.hpp
• ms_quant_isotope.cpp