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calcFragments() :
ms_aahelper
calcFragmentsEx() :
ms_aahelper
calcPeptideMZ() :
ms_aahelper
calculate() :
ms_shapiro_wilk
calculateGeometricMeanRatio() :
ms_quantitation
calculateMedianRatio() :
ms_quantitation
calculateNormalMeanPvalue() :
ms_quant_stats
calculateNormalMedianPvalue() :
ms_quant_stats
calculateNormalWeightedPvalue() :
ms_quant_stats
calculateWeightedGeometricMeanRatio() :
ms_quantitation
cancelCreateSummary() :
ms_mascotresults
canCleave() :
ms_enzyme
canResultsFileBeViewed() :
ms_session
changePassword() :
ms_http_client
checkSeqDBInstallRequest() :
ms_datfile
chisqLowerCriticalValue() :
ms_quant_stats
chisqUpperCriticalValue() :
ms_quant_stats
clear() :
ms_linker_site_vector
,
ms_peptide_quant_key_vector
,
ms_progress_info
clearAccessions() :
ms_crosslinking_accessions
clearAllCutters() :
ms_enzyme
clearAllErrors() :
ms_errs
,
ms_errors
clearAltNames() :
ms_umod_modification
clearAminoAcids() :
ms_umod_configfile
clearAnnotation() :
ms_spectral_lib_entry
,
ms_spectral_lib_peak
,
ms_spectral_lib_peak_list
clearComponents() :
ms_quant_method
clearCorrections() :
ms_quant_component
clearCronJobs() :
ms_cronoptions
clearDatabases() :
ms_databases
,
ms_processoroptions
clearDBLevelTaxId() :
ms_taxonomyrules
clearDenominators() :
ms_quant_ratio
clearDoesNotPairWiths() :
ms_crosslinking_linker
clearElements() :
ms_quant_composition
,
ms_umod_configfile
clearElemRefs() :
ms_umod_aminoacid
,
ms_umod_composition
,
ms_umod_modbrick
clearEntries() :
ms_taxonomyfile
,
ms_wwwoptions
clearEnzymes() :
ms_enzymefile
clearExcludeTaxonomies() :
ms_taxonomychoice
clearExclusions() :
ms_quant_method
clearFragments() :
ms_fragmentvector
clearGencodeFiles() :
ms_taxonomyrules
clearHeaderFields() :
ms_quantitation
clearHitRatioExcluded() :
ms_ms1quant_match
clearHitRatioOutlier() :
ms_ms1quant_match
clearIgnoreDupeAccessions() :
ms_mascotoptions
clearIgnoreMasses() :
ms_modification
clearIgnores() :
ms_quant_localdef
,
ms_umod_modification
clearIncludeTaxonomies() :
ms_taxonomychoice
clearInstruments() :
ms_fragrulesfile
clearIonSeries() :
ms_quant_multiplex
clearIsotopes() :
ms_quant_component
clearLinkers() :
ms_crosslinking_linkers
clearLocalDefinitions() :
ms_quant_modgroup
clearMatchedIon() :
ms_fragment
clearMethods() :
ms_crosslinking_configfile
,
ms_quant_configfile
clearModBricks() :
ms_umod_configfile
clearModFiles() :
ms_quant_modgroup
clearModificationGroups() :
ms_quant_component
,
ms_quant_method
clearModifications() :
ms_modvector
,
ms_modfile
,
ms_umod_configfile
clearModifiedResidues() :
ms_modification
clearMonoLinks() :
ms_crosslinking_linker
clearNeutralLosses() :
ms_quant_specificity
,
ms_umod_specificity
clearNoBreakDescLineIf() :
ms_taxonomyrules
clearNodesFiles() :
ms_taxonomyrules
clearNumerators() :
ms_quant_ratio
clearParam() :
ms_group
,
ms_session
,
ms_user
clearParameters() :
ms_crosslinking_parameters
,
ms_quant_parameters
,
ms_xml_parameters
clearParams() :
ms_security_task
clearParseRules() :
ms_parseoptions
clearPepNeutralLosses() :
ms_quant_specificity
,
ms_umod_specificity
clearPeptideQuantKeys() :
ms_customquantitation
clearPeptideRatios() :
ms_customquantitation
clearPeptides() :
ms_quant_normalisation_peptides
clearPerDbSrcRules() :
ms_taxonomyrules
clearPrefixRemoves() :
ms_taxonomyrules
clearProcessors() :
ms_processoroptions
clearProteins() :
ms_quant_normalisation_proteins
clearRawFileFields() :
ms_quantitation
clearReloadableInfo() :
ms_peptide
clearReportNumberChoices() :
ms_mascotoptions
clearReportRatios() :
ms_quant_method
clearSampleValues() :
ms_shapiro_wilk
clearSeqs() :
ms_quant_method
clearSeries() :
ms_fragmentationrules
clearSpeciesFiles() :
ms_taxonomyrules
clearSpecificities() :
ms_quant_localdef
,
ms_umod_modification
clearSubClusters() :
ms_clusterparams
clearSuffixRemoves() :
ms_taxonomyrules
clearTargetFDRPercentages() :
ms_mascotoptions
clearThreads() :
ms_dbprocessors
clearUnmodified() :
ms_quant_modgroup
clearXrefs() :
ms_umod_modification
closeHandles() :
ms_http_helper_handles
closeIndexFile() :
ms_tinycdb
cluster() :
ms_treecluster
columnMatrix() :
ms_matrix
compareXmlFiles() :
ms_fileutilities
compressMore() :
ms_zip
connectionSettings() :
ms_http_client
,
ms_http_helper
containsVarModIdx() :
ms_linker_site_vector
convertFromLogLevel() :
ms_errs
convertToLogLevel() :
ms_errs
copyFrom() :
ms_modvector
,
ms_quant_correction
,
ms_crosslinking_parameters
,
ms_crosslinking_parameter
,
ms_crosslinking_monolink
,
ms_crosslinking_method
,
ms_crosslinking_linkers
,
ms_quant_normalisation
,
ms_crosslinking_filters
,
ms_umod_elemref
,
ms_crosslinking_configfile
,
ms_crosslinking_accessions
,
ms_crosslinking_accession
,
ms_clusterparams
,
ms_zip
,
ms_computeraddress
,
ms_xic
,
ms_connection_settings
,
ms_aahelper
,
ms_cronjob
,
ms_quant_pepneutralloss
,
ms_umod_modification
,
ms_enzymefile
,
ms_spectral_lib_peak_list
,
ms_quant_protocol
,
ms_cronoptions
,
ms_fragrulesfile
,
ms_quant_replicate
,
ms_quant_ratio
,
ms_taxonomytree
,
ms_quant_parameter
,
ms_umod_aminoacid
,
ms_umod_modification
,
ms_quant_normalisation_peptide
,
ms_linker_site
,
ms_quant_unmodified
,
ms_quant_specificity
,
ms_umod_specificity
,
ms_quant_normalisation_proteins
,
ms_umod_neutralloss
,
ms_security_options
,
ms_crosslinking_does_not_pair_with
,
ms_masses
,
ms_umod_modbrick
,
ms_quant_neutralloss
,
ms_quant_moverz
,
ms_quant_reporter
,
ms_quant_isotope
,
ms_umod_neutralloss
,
ms_crosslinking_linker
,
ms_parseoptions
,
ms_taxnodesfiles
,
ms_taxspeciesfiles
,
ms_wwwentry
,
ms_processoroptions
,
ms_unigeneoptions
,
ms_parserule_plus
,
ms_modvector
,
ms_quant_component
,
ms_treecluster
,
ms_peptide
,
ms_mascotfiles
,
ms_taxonomychoice
,
ms_wwwoptions
,
ms_umod_xref
,
ms_http_client_search
,
ms_quant_method
,
ms_umod_configfile
,
ms_umod_composition
,
ms_enzyme
,
ms_distiller_data
,
ms_xml_parameter
,
ms_umod_element
,
ms_crosslinking_settings
,
ms_quant_normalisation_peptides
,
ms_umod_specificity
,
ms_quant_normalisation_protein
,
ms_quant_integration
,
ms_umod_composition
,
ms_crosslinking_scope
,
ms_quant_multiplex
,
ms_quant_modgroup
,
ms_quant_precursor
,
ms_distiller_master_project
,
ms_umod_modification
,
ms_umod_elemref
,
ms_fragmentationrules
,
ms_fragmentvector
,
ms_umod_neutralloss
,
ms_spectral_lib_peak
,
ms_license
,
ms_linker_site_vector
,
ms_mascotoptions
,
ms_quant_numerator
,
ms_masses
,
ms_modification
,
ms_quant_outliers
,
ms_quant_composition
,
ms_parserule
,
ms_peptide_quant_key_vector
,
ms_dbprocessors
,
ms_taxonomyfile
,
ms_quant_average
,
ms_quant_element
,
ms_quant_configfile
,
ms_http_client
,
ms_distiller_search_status_list
,
ms_quant_localdef
,
ms_modfile
,
ms_processors
,
ms_taxonomyrules
,
ms_protein_quant_ratio
,
ms_modfile
,
ms_peptide_quant_ratio
,
ms_datfile
,
ms_quant_parameters
,
ms_fragment
,
ms_quant_quality
,
ms_libraryoptions
,
ms_quant_satellite
,
ms_mascotresults_params
,
ms_spectral_lib_entry
,
ms_obofile
,
ms_customproperty
,
ms_http_client_session
,
ms_protein
,
ms_http_helper
,
ms_databaseoptions
,
ms_errors
,
ms_databases
copyMassFile() :
ms_modification
countDistinctPeptides() :
ms_quantitation
,
ms_ms2quantitation
,
ms_ms1quantitation
createCrosslinkedPeptide() :
ms_aahelper
createDefaults() :
ms_security
createDirectory() :
ms_fileutilities
createMissingComponents() :
ms_quant_helper
createPeptide() :
ms_aahelper
createSummary() :
ms_peptidesummary
,
ms_mascotresults
createUnassignedList() :
ms_mascotresults
Copyright © 2022
Matrix Science Ltd.
All Rights Reserved. Generated on Thu Mar 31 2022 01:12:30