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Posted by John Cottrell (February 15, 2017)

Exporting search results: tips and tricks

The Mascot Server export utility allows search results to be exported in a wide range of formats, together with the native result file and the MGF peak list. Exporting the result file can be useful if you need it for a third party application and don’t have file share access to the Mascot Server. Exporting the MGF might be useful [...]

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Posted by John Cottrell (May 8, 2013)

Site analysis

Site analysis in the Peptide View report is based on the score differences between matches with different arrangements of modifications. This started off as a rule of thumb, but was given a quantitative basis by Bernhard Kuster’s group at TUM, who analysed a collection of synthetic analogs of natural phosphopeptides to determine false localisation rate as a function of score [...]

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