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Posts
- Blog
- The Third Column: MS/MS fragment ion decharging in Mascot Server 2.7
- Protein FDR in Mascot Server 2.7
- Disaster recovery
- Is your database search reproducible?
- Common myths about protein scores
- The three Ds: Diethylation, Dimethylation and the Deuterium effect
- Identify proteins by more than ‘gut’ feeling
- What are you inferring?
- Back to basics 5: Peptide-spectrum match statistics
- Mascot workflows in Proteome Discoverer
- Back to basics 4: Mascot Daemon
- X!Hunter MGF libraries
- O-fucosylated CID spectra
- Don’t wait: use spectral libraries now
- The plus one dilemma
- Back to basics 3: Quantitation statistics
- Mascot Server cluster mode
- Back to Basics 2: Common mistakes
- Back to Basics: Optimize your search parameters
- Mascot Distiller 2.7: Farewell to re-gridding
- Higher accuracy for oxidation profiles
- Keeping genome databases up to date
- Stepping up security
- MS3 reporter ion quantitation with Mascot Distiller
- Results round-up for the ‘dark matter’ challenge
- A quarter-century in 2018
- Using a shared TaskDB with Mascot Daemon
- Step away from the iodoacetamide
- How to create a spectral library for contaminants
- Exporting spectral library search results
- The most analysed protein is …
- Trying to illuminate proteomics ‘dark matter’
- Ion series for EThcD
- Mascot Security: priority settings
- Mascot Security: privacy settings
- Exporting search results: tips and tricks
- How many of you are there in there? Processing and searching chimeric MS/MS spectra with Mascot Distiller and Mascot Server
- Protein inference for spectral library searches
- Benchmarking your Mascot Server
- Retention time
- Getting the most out of your Mascot Server hardware
- Not Better Together: Processing and searching combined CID+ETD datasets with Mascot Distiller 2.6
- Improved security for Mascot Installations under Linux
- High FDRs for methylated peptides III
- High FDRs for methylated peptides II
- High FDRs for methylated peptides
- Some peaks are more equal than others
- Selenocysteine
- Disruption ahead for NCBI databases
- 64 Baker Street
- Shooting fish in a barrel
- PSI file formats, part 4: mzTab
- Mass-tolerant vs Error tolerant
- PSI file formats, part 3: repositories
- Search only for peptides we care about?
- PSI file formats, part 2: validation
- PSI file formats, part 1: mzIdentML
- Integrating Mascot into a proteomics pipeline (Part 2)
- Expressed Sequence Tags
- Searching DIA data, especially Swath
- Creating a list of confidently identified proteins
- Running Mascot Server on a supercomputer
- Using Mascot security to share search results
- How Mascot Insight uses gene ontology and molecular interaction data
- Integrating Mascot into a proteomics pipeline
- Spring clean your mascot.dat
- Peak list arcana*
- How long should a search take? – Data and search parameters
- How long should a search take? – Hardware and configuration
- Does protein FDR have any meaning?
- Modifications round-up, part 2
- Modifications round-up, part 1
- Current challenges in quantitative proteomics
- Running Mascot in a virtual machine
- Backing up your Mascot Server
- Site analysis
- Non-standard amino acid residues
- When to use Combination searches
- Don’t get stuck in a queue
- Quantify then identify or identify then quantify?
- High mass accuracy: fragments
- High mass accuracy: precursors
- News
- Mascot Server 2.7 preview
- 2019 ASMS user meeting presentations now online
- 2018 ASMS user meeting presentations now online
- 20% off Mascot Server updates for 20th anniversary
- Mascot 2.6.2 patch release
- Mascot Distiller 2.7 released
- 2017 ASMS user meeting presentations now online
- Mascot 2.6.1 patch release
- Release of Mascot Server 2.6
- Mascot Server 2.6 preview
- NCBInr is dead, long live NCBIprot
- 2016 ASMS user meeting presentations now online
- Mascot Distiller 2.6 released
- New YouTube video
- Peak picking tutorial
- 2015 ASMS user meeting presentations now online
- Training presentations updated
- Mascot 2.5.1 patch release
- 2014 ASMS user meeting presentations now online
- Mascot 2.5 stress test
- ASMS 2014
- Press release announcing launch of Mascot Insight
- 2013 ASMS user meeting presentations now online
- Matrix Science receives DGMS Award
- New look for the Matrix Science website
- Training courses in 2013
- Free webcast version of Mascot training now available
- Matrix Science wins 2012 HUPO Science and Technology Award
- Mascot Distiller now supports a variable modification on the same residue as the label
- 2012 ASMS user meeting presentations now online
- Mascot Server 2.4 released
- Mascot Distiller 2.4 released
- 2011 ASMS user meeting presentations now online
- Training course dates for 2011
- 2010 ASMS user meeting presentations now online
- EST databases on this site switched from GenBank to EMBL
- Mascot Server 2.3 released
- Mascot 2.3 beta test
- Mascot Distiller 2.3 released
- 2009 ASMS user meeting presentations now online
- Larger searches permitted on free public Mascot Server
- Mascot Distiller Quantitation Toolbox released
- 2008 ASMS user meeting presentations now online
- EST_others database split into three parts based on taxonomy
- Press release describing integration between Mascot and Thermo Fisher Scientific BioWorks
- Mascot Parser is now free of charge!
- New help page describes how to configure MSIPI
- New training course dates for 2008
- New patch available for Mascot Server 2.2
- New release of Mascot Wizard
- Press release announcing collaboration between Proxeon and Matrix Science
- 2007 ASMS user meeting presentations now online
- New maintenance release of Mascot Distiller (2.1.1)
- Mascot version 2.2 is now running on this server
- Mascot Distiller 2.1 released
- New help page for Applied Biosystems Data Explorer
- 2006 ASMS user meeting presentations now online
- New patches available for Mascot Server and Mascot Daemon
- New help page for target-decoy searching
- New help page describing PC hardware for Mascot Server
- Mascot Distiller 2.0 released
- New patches available for Mascot Server and Mascot Daemon
- New Flash movies to illustrate the look and feel of Mascot Integra
- 2005 ASMS user meeting presentations now online
- Mascot Server 2.1 released and running on this server
- Press Release announcing a collaboration between Waters and Matrix Science
- Mascot Integra officially launched at ABRF in Savannah, GA.
- Updated Mascot product brochure