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- Help; ASMS Breakfast Meeting Presentations 2016
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- Help; ASMS Workshop and User Meeting 2001
- Help; ASMS Workshop and User Meeting 2002
- Help; ASMS Workshop and User Meeting 2003
- Help; ASMS Workshop and User Meeting 2004
- Help; ASMS Workshop and User Meeting 2005
- Help; ASMS Workshop and User Meeting 2006
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- Mascot database search; Access Mascot Server
- Mascot database search; Database search help
- Help; A history of Mascot and Mowse
- Help; AB Sciex Analyst
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- Help; Accuracy & resolution
- Help; Amino acid reference data
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- Help; New features in Mascot 1.5
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- Help; New features in Mascot 2.0
- Help; New features in Mascot 2.1
- Help; New features in Mascot 2.2
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- Help; New features in Mascot Server 2.6
- Help; New web site features, September 2001
- Help; Nucleic acid translation
- Help; PC specification for Mascot Server
- Help; Peptide fragmentation
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- Help; Quantitation; Average protocol
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- Help; Quantitation; emPAI protocol
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- Help; Sequence database setup; EMBL EST
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- Help; Sequence database setup; Manual configuration and updating
- Help; Sequence database setup; NCBI EST (OBSOLETE)
- Help; Sequence database setup; NCBI nr
- Help; Sequence database setup; NCBI nr with gi numbers (OBSOLETE)
- Help; Sequence database setup; Spectral library
- Help; Sequence database setup; SwissProt
- Help; Sequence database setup; TrEMBL
- Help; Sequence database setup; UniProt proteomes
- Help; Sequence database setup; UniRef
- Help; Sequence databases
- Help; Sequence Query
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- Help; Spectral library search
- Help; Summary Reports for MS/MS
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- Help; Trypsin autolysis
- Help; Updating and upgrading to Mascot Server 2.4
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- Help; Waters Masslynx
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- Technical support; Mascot Server; Mascot 2.2.01 for Windows Installation Troubleshooter
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- Technical support; Mascot Distiller
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- Technical support; Mascot Server
- Technical support; Mascot Server; Version 1.7
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- Technical support; Mascot Server; Version 2.0
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- Technical support; Mascot Server; Version 2.5
- Technical support; Mascot Server; Version 2.6
- Technical support; Mascot Wizard
- Terms of use
- Useful links
Posts
- Blog
- Exporting spectral library search results
- The most analysed protein is …
- Trying to illuminate proteomics ‘dark matter’
- Ion series for EThcD
- Mascot Security: priority settings
- Mascot Security: privacy settings
- Exporting search results: tips and tricks
- How many of you are there in there? Processing and searching chimeric MS/MS spectra with Mascot Distiller and Mascot Server
- Protein inference for spectral library searches
- Benchmarking your Mascot Server
- Retention time
- Getting the most out of your Mascot Server hardware
- Not Better Together: Processing and searching combined CID+ETD datasets with Mascot Distiller 2.6
- Improved security for Mascot Installations under Linux
- High FDRs for methylated peptides III
- High FDRs for methylated peptides II
- High FDRs for methylated peptides
- Some peaks are more equal than others
- Selenocysteine
- Disruption ahead for NCBI databases
- 64 Baker Street
- Shooting fish in a barrel
- PSI file formats, part 4: mzTab
- Mass-tolerant vs Error tolerant
- PSI file formats, part 3: repositories
- Search only for peptides we care about?
- PSI file formats, part 2: validation
- PSI file formats, part 1: mzIdentML
- Integrating Mascot into a proteomics pipeline (Part 2)
- Expressed Sequence Tags
- Searching DIA data, especially Swath
- Creating a list of confidently identified proteins
- Running Mascot Server on a supercomputer
- Using Mascot security to share search results
- How Mascot Insight uses gene ontology and molecular interaction data
- Integrating Mascot into a proteomics pipeline
- Spring clean your mascot.dat
- Peak list arcana*
- How long should a search take? – Data and search parameters
- How long should a search take? – Hardware and configuration
- Does protein FDR have any meaning?
- Modifications round-up, part 2
- Modifications round-up, part 1
- Current challenges in quantitative proteomics
- Running Mascot in a virtual machine
- Backing up your Mascot Server
- Site analysis
- Non-standard amino acid residues
- When to use Combination searches
- Don’t get stuck in a queue
- Quantify then identify or identify then quantify?
- High mass accuracy: fragments
- High mass accuracy: precursors
- News
- 2017 ASMS user meeting presentations now online
- Mascot 2.6.1 patch release
- Release of Mascot Server 2.6
- Mascot Server 2.6 preview
- NCBInr is dead, long live NCBIprot
- 2016 ASMS user meeting presentations now online
- Mascot Distiller 2.6 released
- New YouTube video
- Peak picking tutorial
- 2015 ASMS user meeting presentations now online
- Training presentations updated
- Mascot 2.5.1 patch release
- 2014 ASMS user meeting presentations now online
- Mascot 2.5 stress test
- ASMS 2014
- Press release announcing launch of Mascot Insight
- 2013 ASMS user meeting presentations now online
- Matrix Science receives DGMS Award
- New look for the Matrix Science website
- Training courses in 2013
- Free webcast version of Mascot training now available
- Matrix Science wins 2012 HUPO Science and Technology Award
- Mascot Distiller now supports a variable modification on the same residue as the label
- 2012 ASMS user meeting presentations now online
- Mascot Server 2.4 released
- Mascot Distiller 2.4 released
- 2011 ASMS user meeting presentations now online
- Training course dates for 2011
- 2010 ASMS user meeting presentations now online
- EST databases on this site switched from GenBank to EMBL
- Mascot Server 2.3 released
- Mascot 2.3 beta test
- Mascot Distiller 2.3 released
- 2009 ASMS user meeting presentations now online
- Larger searches permitted on free public Mascot Server
- Mascot Distiller Quantitation Toolbox released
- 2008 ASMS user meeting presentations now online
- EST_others database split into three parts based on taxonomy
- Press release describing integration between Mascot and Thermo Fisher Scientific BioWorks
- Mascot Parser is now free of charge!
- New help page describes how to configure MSIPI
- New training course dates for 2008
- New patch available for Mascot Server 2.2
- New release of Mascot Wizard
- Press release announcing collaboration between Proxeon and Matrix Science
- 2007 ASMS user meeting presentations now online
- New maintenance release of Mascot Distiller (2.1.1)
- Mascot version 2.2 is now running on this server
- Mascot Distiller 2.1 released
- New help page for Applied Biosystems Data Explorer
- 2006 ASMS user meeting presentations now online
- New patches available for Mascot Server and Mascot Daemon
- New help page for target-decoy searching
- New help page describing PC hardware for Mascot Server
- Mascot Distiller 2.0 released
- New patches available for Mascot Server and Mascot Daemon
- New Flash movies to illustrate the look and feel of Mascot Integra
- 2005 ASMS user meeting presentations now online
- Mascot Server 2.1 released and running on this server
- Press Release announcing a collaboration between Waters and Matrix Science
- Mascot Integra officially launched at ABRF in Savannah, GA.
- Updated Mascot product brochure
- New releases of Mascot Distiller and Mascot Wizard
- New patches for Mascot Server and Mascot Daemon
- New help page describing how to share Mascot results
- Press Release describing Mascot integration into Nonlinear Dynamics protein informatics system
- Hardware upgrade for free public Mascot Server
- iTRAQ modification data added to Unimod
- Mascot support for Electron Transfer Dissociation
- New versions of Mascot Distiller and Mascot Wizard are available for download
- 2004 ASMS user meeting presentations now online
- New patch for Mascot Server 2.0
- Matrix Science is awarded the Frost & Sullivan 2003 Technology Leadership Award
- Mascot Server version 2.0 released and running on this server
- Press Release announcing new Matrix Science subsidiary in Japan
- New releases of Mascot Distiller and Mascot Wizard
- Matrix Science web site redesigned
- New product: Mascot Distiller
- 2003 ASMS user meeting presentations now online
- Hardware upgrade for free public Mascot Server
- Press Release describing central Mascot server at NIH
- Mascot Server 1.9 released
- New help pages for Analyst, Masslynx and Xcalibur
- New product: Mascot Parser
- New and expanded help pages for sequence database setup
- Press Release announcing a marketing agreement with LabVantage Solutions
- 2002 ASMS user meeting presentations now online
- Mascot brochure published
- Mascot 1.8 released
- Mascot now available for IBM AIX
- Swiss-Prot is now available for searching on this site
- Mascot Server hardware upgraded
- New support page for Mascot Server
- Paper describing the use of Mascot to search the draft assembly of the human genome
- 2001 ASMS user meeting presentations now online
- Press Release announcing OEM agreement with Applied Biosystems | MDS Sciex
- GeneProt have selected Mascot as the search engine for their first industrial scale proteomics factory
- BioVisioN and Matrix Science will collaborate to develop new bioinformatic tools
- New background article on Quadrupole Ion Trap mass spectrometry
- New product: Mascot Cluster
- Mascot version 1.5 released
- Peer reviewed paper describing Mascot published in Electrophoresis
- Searches can now be filtered using taxonomy
- Technical Brief: Running Mascot on a PC
- Added support for new MS/MS peak list formats