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Mascot database search > Database search help

Database search help

Mascot – General

  • Mascot search overview
  • A History of Mascot and Mowse
  • Mascot training webcasts
  • Mascot FAQ’s

Using Mascot

  • Search parameter reference
  • Data file format
  • Scoring algorithm
  • Result report overview
  • Summary reports for PMF
  • Summary reports for MS/MS
  • MS/MS results interpretation
  • Sharing result reports
  • Error tolerant search
  • Exporting result reports
  • Decoy databases
  • Top-down searches
  • Percolator
  • Quantitation
  • Spectral Library searches
  • Crosslink search

Mascot system administration

  • Sequence database setup
  • PC Hardware for Mascot Server
  • Disaster recovery

Virtual infrastructure

  • Hardware virtualisation
  • Mascot Server in the Cloud
  • Mascot Server on AWS
  

Instrument specific tips

  • AB SCIEX Analyst
  • AB SCIEX Data Explorer
  • AB SCIEX 4000 / 5000 Series (TOF/TOF)
  • Waters Masslynx
  • Thermo Xcalibur

ASMS User Meeting presentations

  • 2001 meeting
  • 2002 meeting
  • 2003 meeting
  • 2004 meeting
  • 2005 meeting
  • 2006 meeting
  • 2007 meeting
  • 2008 meeting
  • 2009 meeting
  • 2010 meeting
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  • 2013 meeting
  • 2014 meeting
  • 2015 meeting
  • 2016 meetings
  • 2017 meetings
  • 2018 meetings
  • 2019 meetings
  • 2020 meetings
  • 2021 meetings
  • 2022 meetings
  

Protein identification

  • Peptide Mass Fingerprint
  • Sequence Query
  • MS/MS Ion Search

Protein chemistry

  • Post translational modifications
  • Enzymes
  • Autolysis
  • Sequence databases
  • Nucleic acid translation
  • Amino acid reference
  • Contaminants
  • BLAST & FastA

Mass spectrometry

  • MS/MS fragmentation
  • Accuracy & resolution

Miscellaneous

  • Privacy FAQ
  • Web Browser Compatibility

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